miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 176822 1.12 0.006047
Target:  5'- gGGCGUGGUGAACGGUAAAUGGCCCACu -3'
miRNA:   3'- -CCGCACCACUUGCCAUUUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 19152 0.81 0.417023
Target:  5'- cGGCGUGGUGAccgagagcACGGcgcuGGUGGCCgACg -3'
miRNA:   3'- -CCGCACCACU--------UGCCau--UUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 124196 0.78 0.547699
Target:  5'- cGGCugggGGUGAGCGGgcccuuucUGGCCCGCg -3'
miRNA:   3'- -CCGca--CCACUUGCCauuu----ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 167052 0.74 0.775675
Target:  5'- cGGCGUGGcgcucaUGAcgcCGGUGcc-GGCCCACa -3'
miRNA:   3'- -CCGCACC------ACUu--GCCAUuuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 203335 0.74 0.79745
Target:  5'- aGCGUGGcGAugGGgguGcccugcggcaccacgGUGGCCCGCg -3'
miRNA:   3'- cCGCACCaCUugCCau-U---------------UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 87738 0.73 0.820086
Target:  5'- cGGCGUGGUGGGCcccGGcccg-GGCCCcgGCg -3'
miRNA:   3'- -CCGCACCACUUG---CCauuuaCCGGG--UG- -5'
14547 5' -53 NC_003521.1 + 50506 0.73 0.828499
Target:  5'- cGGCGgcGGUGGagAUGGUAccAAUGGgCCGCg -3'
miRNA:   3'- -CCGCa-CCACU--UGCCAU--UUACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 37474 0.71 0.888938
Target:  5'- aGGCGUGuGUGGacGCGGUcugccccccggcGuuuucgGGCCCGCg -3'
miRNA:   3'- -CCGCAC-CACU--UGCCA------------Uuua---CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 184867 0.71 0.901931
Target:  5'- cGGCGUGGUGGggcugcacACGGUGcucAUGcGCCUggGCu -3'
miRNA:   3'- -CCGCACCACU--------UGCCAUu--UAC-CGGG--UG- -5'
14547 5' -53 NC_003521.1 + 220993 0.71 0.901931
Target:  5'- cGCG-GGcGAACGuGUAGGUGGCCaGCg -3'
miRNA:   3'- cCGCaCCaCUUGC-CAUUUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 19905 0.71 0.908087
Target:  5'- cGGCGUGcGgGAGCGGcuGGUGGUCCu- -3'
miRNA:   3'- -CCGCAC-CaCUUGCCauUUACCGGGug -5'
14547 5' -53 NC_003521.1 + 163815 0.7 0.919705
Target:  5'- cGGCGUGGUcAACGGcauGAUGccgugccuGCCCAUc -3'
miRNA:   3'- -CCGCACCAcUUGCCau-UUAC--------CGGGUG- -5'
14547 5' -53 NC_003521.1 + 64032 0.7 0.925164
Target:  5'- -aCGUcaauGACGGUAAAUGGCCCGCc -3'
miRNA:   3'- ccGCAccacUUGCCAUUUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 74899 0.7 0.925164
Target:  5'- cGCGagacGGUGGcgGCGGUGGAgucGGCCCGg -3'
miRNA:   3'- cCGCa---CCACU--UGCCAUUUa--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 213203 0.7 0.925164
Target:  5'- aGCGUGaucuUGAACauGGUGAugaGGCCCACg -3'
miRNA:   3'- cCGCACc---ACUUG--CCAUUua-CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 45558 0.7 0.927282
Target:  5'- cGGCGaaUGGUGAGCGuGgagcccuucucgcccUAcucGGUGGCCUACa -3'
miRNA:   3'- -CCGC--ACCACUUGC-C---------------AU---UUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 193312 0.7 0.930389
Target:  5'- gGGgGUGGUGGgcACGGUGggGGUGGucgccuucguuCCCAUg -3'
miRNA:   3'- -CCgCACCACU--UGCCAU--UUACC-----------GGGUG- -5'
14547 5' -53 NC_003521.1 + 18260 0.7 0.934892
Target:  5'- aGCgGUGGUGGggaccugcccgcgACGGgag--GGCCCGCa -3'
miRNA:   3'- cCG-CACCACU-------------UGCCauuuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 129218 0.7 0.940138
Target:  5'- cGCGUGGUGGGCaGUcc--GGCgCCGCu -3'
miRNA:   3'- cCGCACCACUUGcCAuuuaCCG-GGUG- -5'
14547 5' -53 NC_003521.1 + 52286 0.7 0.940138
Target:  5'- cGGCGUucauGGUGAugGcgacGUGg--GGCCCGCc -3'
miRNA:   3'- -CCGCA----CCACUugC----CAUuuaCCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.