miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 164217 0.7 0.940138
Target:  5'- cGGCgGUGGUagcggcggcuGGACGGUGGA-GGCUCGg -3'
miRNA:   3'- -CCG-CACCA----------CUUGCCAUUUaCCGGGUg -5'
14547 5' -53 NC_003521.1 + 129218 0.7 0.940138
Target:  5'- cGCGUGGUGGGCaGUcc--GGCgCCGCu -3'
miRNA:   3'- cCGCACCACUUGcCAuuuaCCG-GGUG- -5'
14547 5' -53 NC_003521.1 + 89252 0.7 0.944663
Target:  5'- gGGCGUGcUGAcGCGGUGAcacgagacGCCCGCg -3'
miRNA:   3'- -CCGCACcACU-UGCCAUUuac-----CGGGUG- -5'
14547 5' -53 NC_003521.1 + 206436 0.69 0.947694
Target:  5'- gGGCGUGGUGuagcgauugacgugGGCGGggGAUuGCCC-Ca -3'
miRNA:   3'- -CCGCACCAC--------------UUGCCauUUAcCGGGuG- -5'
14547 5' -53 NC_003521.1 + 232575 0.69 0.948959
Target:  5'- uGUGUGGUGAGCGGgg---GGCgaCAUg -3'
miRNA:   3'- cCGCACCACUUGCCauuuaCCGg-GUG- -5'
14547 5' -53 NC_003521.1 + 103546 0.69 0.948959
Target:  5'- aGGCGUGcGUGGggaugACGGggcccAGGUcGCCCGCg -3'
miRNA:   3'- -CCGCAC-CACU-----UGCCa----UUUAcCGGGUG- -5'
14547 5' -53 NC_003521.1 + 111196 0.69 0.953027
Target:  5'- cGCGgacGGUGGGCuGGgcGAUGGCgCCGg -3'
miRNA:   3'- cCGCa--CCACUUG-CCauUUACCG-GGUg -5'
14547 5' -53 NC_003521.1 + 168138 0.69 0.95943
Target:  5'- aGCGccgugGGUGGACGGggcgGAAUaggggcgccgcccaGGCCCAUc -3'
miRNA:   3'- cCGCa----CCACUUGCCa---UUUA--------------CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 165121 0.69 0.960495
Target:  5'- cGGCuGUGGUGcgGACGGggGcUGGaCCGCg -3'
miRNA:   3'- -CCG-CACCAC--UUGCCauUuACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 171296 0.69 0.963903
Target:  5'- cGCGUGGgcugGAagGCGGUGcugGGCCUcaACg -3'
miRNA:   3'- cCGCACCa---CU--UGCCAUuuaCCGGG--UG- -5'
14547 5' -53 NC_003521.1 + 134697 0.68 0.967099
Target:  5'- ---cUGGUG-GCGGUAGGU-GCCCACg -3'
miRNA:   3'- ccgcACCACuUGCCAUUUAcCGGGUG- -5'
14547 5' -53 NC_003521.1 + 209555 0.68 0.967099
Target:  5'- cGGCGgGGUGGcggcgACGGUGGcgggGGUCCGg -3'
miRNA:   3'- -CCGCaCCACU-----UGCCAUUua--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 124098 0.68 0.969214
Target:  5'- cGGCGUGGgcggGAAgcagcgcgucgcugUGGUGAuucccGCCCGCg -3'
miRNA:   3'- -CCGCACCa---CUU--------------GCCAUUuac--CGGGUG- -5'
14547 5' -53 NC_003521.1 + 222009 0.68 0.970091
Target:  5'- cGGCGUGG---GCGGgaagcacuUGGCCaCGCg -3'
miRNA:   3'- -CCGCACCacuUGCCauuu----ACCGG-GUG- -5'
14547 5' -53 NC_003521.1 + 228257 0.68 0.972882
Target:  5'- cGcCGUGGUGGuCGGUu--UGGCCagCACg -3'
miRNA:   3'- cC-GCACCACUuGCCAuuuACCGG--GUG- -5'
14547 5' -53 NC_003521.1 + 12357 0.68 0.973944
Target:  5'- gGGCGUGGUGGGCGaGUcgcuacccuccGGCCUc- -3'
miRNA:   3'- -CCGCACCACUUGC-CAuuua-------CCGGGug -5'
14547 5' -53 NC_003521.1 + 148441 0.68 0.975229
Target:  5'- cGGCGgcuccaggGGUGGcCGGUGcGUGcugaugacgaaaaGCCCGCg -3'
miRNA:   3'- -CCGCa-------CCACUuGCCAUuUAC-------------CGGGUG- -5'
14547 5' -53 NC_003521.1 + 103473 0.68 0.97548
Target:  5'- uGCG-GGaGGGCGGcuccAGcgGGCCCGCg -3'
miRNA:   3'- cCGCaCCaCUUGCCa---UUuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 98227 0.68 0.97548
Target:  5'- cGGCGUGG-GAgGCGGgGAGgcgggGGCggCCACg -3'
miRNA:   3'- -CCGCACCaCU-UGCCaUUUa----CCG--GGUG- -5'
14547 5' -53 NC_003521.1 + 69095 0.68 0.977188
Target:  5'- uGGCGUGGUGGuacuuggugugcACGGUGuuauuguggaugacGGUGGgUgGCa -3'
miRNA:   3'- -CCGCACCACU------------UGCCAU--------------UUACCgGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.