miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 186815 0.67 0.987405
Target:  5'- cGGCGUGGgcGAccagaucugACGGUccugcGAAUggcGGCCCAg -3'
miRNA:   3'- -CCGCACCa-CU---------UGCCA-----UUUA---CCGGGUg -5'
14547 5' -53 NC_003521.1 + 24363 0.67 0.987252
Target:  5'- aGGUGcUGGUGAugcugAUGGUAGuucucaaaaagccGgcgccgGGCCCGCg -3'
miRNA:   3'- -CCGC-ACCACU-----UGCCAUU-------------Ua-----CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 196952 0.67 0.987099
Target:  5'- aGCGUGGgcgacggcccggGAGcCGGccggggcgccugUGAcgGGCCCGCg -3'
miRNA:   3'- cCGCACCa-----------CUU-GCC------------AUUuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 38240 0.67 0.985816
Target:  5'- cGGCG-GGcgGGGCGG-AGAcgcGGCCCAg -3'
miRNA:   3'- -CCGCaCCa-CUUGCCaUUUa--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 238468 0.67 0.985816
Target:  5'- cGGCG-GGcgGGGCGG-AGAcgcGGCCCAg -3'
miRNA:   3'- -CCGCaCCa-CUUGCCaUUUa--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 32193 0.67 0.985816
Target:  5'- uGCG-GGUcGGGCauGGUGggGAUGGCUCGCa -3'
miRNA:   3'- cCGCaCCA-CUUG--CCAU--UUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 86614 0.67 0.985816
Target:  5'- -uCGUGGUG-GCGGUAGAgcaggaaGCCCAg -3'
miRNA:   3'- ccGCACCACuUGCCAUUUac-----CGGGUg -5'
14547 5' -53 NC_003521.1 + 117898 0.67 0.985816
Target:  5'- cGGUGcUGGUGAGCGGUAAucAUaGCaaCGCa -3'
miRNA:   3'- -CCGC-ACCACUUGCCAUU--UAcCGg-GUG- -5'
14547 5' -53 NC_003521.1 + 224434 0.67 0.984078
Target:  5'- uGCGUGGUGGGCGagc---GGUCCAg -3'
miRNA:   3'- cCGCACCACUUGCcauuuaCCGGGUg -5'
14547 5' -53 NC_003521.1 + 31020 0.67 0.982961
Target:  5'- cGGCGaggacgcguucguggUGGUGGGgGGUGGGaGGaCCACg -3'
miRNA:   3'- -CCGC---------------ACCACUUgCCAUUUaCCgGGUG- -5'
14547 5' -53 NC_003521.1 + 213749 0.67 0.982183
Target:  5'- aGGcCGUGGUG-GCGGccacguagaAGAUGGCCaGCg -3'
miRNA:   3'- -CC-GCACCACuUGCCa--------UUUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 177923 0.67 0.982183
Target:  5'- gGGCGUcgucGGgagGGAUGGgGAGUGGCCgGu -3'
miRNA:   3'- -CCGCA----CCa--CUUGCCaUUUACCGGgUg -5'
14547 5' -53 NC_003521.1 + 23581 0.67 0.982183
Target:  5'- --gGUGGUGGgcGCGGgggugcUGGCCUGCa -3'
miRNA:   3'- ccgCACCACU--UGCCauuu--ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 176925 0.67 0.982183
Target:  5'- gGGCGggGGUcgugGGGCGGUcagccAAGUGGgCCAUu -3'
miRNA:   3'- -CCGCa-CCA----CUUGCCA-----UUUACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 368 0.67 0.981985
Target:  5'- cGGCGUGcuGUGGAacgaaGGUGAGugugugcUGGCgCGCg -3'
miRNA:   3'- -CCGCAC--CACUUg----CCAUUU-------ACCGgGUG- -5'
14547 5' -53 NC_003521.1 + 40690 0.67 0.981985
Target:  5'- cGGCGUGcuGUGGAacgaaGGUGAGugugugcUGGCgCGCg -3'
miRNA:   3'- -CCGCAC--CACUUg----CCAUUU-------ACCGgGUG- -5'
14547 5' -53 NC_003521.1 + 18329 0.67 0.980337
Target:  5'- cGGCGUGGUGcuguuggaccaguuCGGc--GUGGUCUACu -3'
miRNA:   3'- -CCGCACCACuu------------GCCauuUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 190580 0.67 0.980124
Target:  5'- cGGCGUGaucgaGGGCGagGAGUGGcCCCGCg -3'
miRNA:   3'- -CCGCACca---CUUGCcaUUUACC-GGGUG- -5'
14547 5' -53 NC_003521.1 + 164616 0.67 0.980124
Target:  5'- gGGCGUGcc-GGCGGgcuucUGGCCCAUc -3'
miRNA:   3'- -CCGCACcacUUGCCauuu-ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 237394 0.67 0.980124
Target:  5'- cGGCGUcGGcauGGCGGgggucUGAGUGGCCC-Ca -3'
miRNA:   3'- -CCGCA-CCac-UUGCC-----AUUUACCGGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.