Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14547 | 5' | -53 | NC_003521.1 | + | 206615 | 0.68 | 0.978806 |
Target: 5'- gGGCGccgucuacgccgcccUGGUGGGCcacgauaagcuGGUcAAGuUGGCCCGCg -3' miRNA: 3'- -CCGC---------------ACCACUUG-----------CCA-UUU-ACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 32140 | 0.68 | 0.977892 |
Target: 5'- gGGCGcGGUGcaccaAGCGGcgGAagGcGCCCGCg -3' miRNA: 3'- -CCGCaCCAC-----UUGCCa-UUuaC-CGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 121813 | 0.68 | 0.977892 |
Target: 5'- cGGcCGUGGUGG--GGU-AGUGGUgCACg -3' miRNA: 3'- -CC-GCACCACUugCCAuUUACCGgGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 128320 | 0.68 | 0.977892 |
Target: 5'- -cCGUGGUGuagccGCGGUccucgggcAGGUacaGGCCCACg -3' miRNA: 3'- ccGCACCACu----UGCCA--------UUUA---CCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 69095 | 0.68 | 0.977188 |
Target: 5'- uGGCGUGGUGGuacuuggugugcACGGUGuuauuguggaugacGGUGGgUgGCa -3' miRNA: 3'- -CCGCACCACU------------UGCCAU--------------UUACCgGgUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 98227 | 0.68 | 0.97548 |
Target: 5'- cGGCGUGG-GAgGCGGgGAGgcgggGGCggCCACg -3' miRNA: 3'- -CCGCACCaCU-UGCCaUUUa----CCG--GGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 103473 | 0.68 | 0.97548 |
Target: 5'- uGCG-GGaGGGCGGcuccAGcgGGCCCGCg -3' miRNA: 3'- cCGCaCCaCUUGCCa---UUuaCCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 148441 | 0.68 | 0.975229 |
Target: 5'- cGGCGgcuccaggGGUGGcCGGUGcGUGcugaugacgaaaaGCCCGCg -3' miRNA: 3'- -CCGCa-------CCACUuGCCAUuUAC-------------CGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 12357 | 0.68 | 0.973944 |
Target: 5'- gGGCGUGGUGGGCGaGUcgcuacccuccGGCCUc- -3' miRNA: 3'- -CCGCACCACUUGC-CAuuua-------CCGGGug -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 228257 | 0.68 | 0.972882 |
Target: 5'- cGcCGUGGUGGuCGGUu--UGGCCagCACg -3' miRNA: 3'- cC-GCACCACUuGCCAuuuACCGG--GUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 222009 | 0.68 | 0.970091 |
Target: 5'- cGGCGUGG---GCGGgaagcacuUGGCCaCGCg -3' miRNA: 3'- -CCGCACCacuUGCCauuu----ACCGG-GUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 124098 | 0.68 | 0.969214 |
Target: 5'- cGGCGUGGgcggGAAgcagcgcgucgcugUGGUGAuucccGCCCGCg -3' miRNA: 3'- -CCGCACCa---CUU--------------GCCAUUuac--CGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 134697 | 0.68 | 0.967099 |
Target: 5'- ---cUGGUG-GCGGUAGGU-GCCCACg -3' miRNA: 3'- ccgcACCACuUGCCAUUUAcCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 209555 | 0.68 | 0.967099 |
Target: 5'- cGGCGgGGUGGcggcgACGGUGGcgggGGUCCGg -3' miRNA: 3'- -CCGCaCCACU-----UGCCAUUua--CCGGGUg -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 171296 | 0.69 | 0.963903 |
Target: 5'- cGCGUGGgcugGAagGCGGUGcugGGCCUcaACg -3' miRNA: 3'- cCGCACCa---CU--UGCCAUuuaCCGGG--UG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 165121 | 0.69 | 0.960495 |
Target: 5'- cGGCuGUGGUGcgGACGGggGcUGGaCCGCg -3' miRNA: 3'- -CCG-CACCAC--UUGCCauUuACCgGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 168138 | 0.69 | 0.95943 |
Target: 5'- aGCGccgugGGUGGACGGggcgGAAUaggggcgccgcccaGGCCCAUc -3' miRNA: 3'- cCGCa----CCACUUGCCa---UUUA--------------CCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 111196 | 0.69 | 0.953027 |
Target: 5'- cGCGgacGGUGGGCuGGgcGAUGGCgCCGg -3' miRNA: 3'- cCGCa--CCACUUG-CCauUUACCG-GGUg -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 232575 | 0.69 | 0.948959 |
Target: 5'- uGUGUGGUGAGCGGgg---GGCgaCAUg -3' miRNA: 3'- cCGCACCACUUGCCauuuaCCGg-GUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 103546 | 0.69 | 0.948959 |
Target: 5'- aGGCGUGcGUGGggaugACGGggcccAGGUcGCCCGCg -3' miRNA: 3'- -CCGCAC-CACU-----UGCCa----UUUAcCGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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