miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 238469 0.66 0.745825
Target:  5'- gGCGGgCGGGGCGga-GACGCgGCccaGGg -3'
miRNA:   3'- aCGCUgGCCCCGCgagCUGCG-CGa--CC- -5'
14560 3' -62.8 NC_003521.1 + 214562 0.66 0.745825
Target:  5'- gGUGcCUGGGGUGCagca-GCGCUGGc -3'
miRNA:   3'- aCGCuGGCCCCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 36768 0.66 0.744935
Target:  5'- gUGCGACUGcGGCGaCUgGcagggccACGCGCUGcGg -3'
miRNA:   3'- -ACGCUGGCcCCGC-GAgC-------UGCGCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 128056 0.66 0.740471
Target:  5'- aGUGGCCGacGCGCcgcgCGAugccgcccaugggcuCGCGCUGGa -3'
miRNA:   3'- aCGCUGGCccCGCGa---GCU---------------GCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 131323 0.66 0.740471
Target:  5'- aGCGGCCGgcgcgaccacucgcuGGaGCGCcUGGCGCGCa-- -3'
miRNA:   3'- aCGCUGGC---------------CC-CGCGaGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 86381 0.66 0.736886
Target:  5'- gUGCGGaaGGGgaagaagggccaGCGgUCGACGCGggGGa -3'
miRNA:   3'- -ACGCUggCCC------------CGCgAGCUGCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 104967 0.66 0.736886
Target:  5'- gUGCcGCgGGGGCGCcgcgaGACGuCGgaGGa -3'
miRNA:   3'- -ACGcUGgCCCCGCGag---CUGC-GCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 122108 0.66 0.736886
Target:  5'- gUGCGGCUGcagcGGCGuCUCGcCGCgGCUGa -3'
miRNA:   3'- -ACGCUGGCc---CCGC-GAGCuGCG-CGACc -5'
14560 3' -62.8 NC_003521.1 + 240123 0.66 0.736886
Target:  5'- gGCGugCGGucgucccggcgGGCGCggaaaGCGCUGGc -3'
miRNA:   3'- aCGCugGCC-----------CCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 164202 0.66 0.736886
Target:  5'- gGCGGaacggCGGGGCgGCggugguagCGGCG-GCUGGa -3'
miRNA:   3'- aCGCUg----GCCCCG-CGa-------GCUGCgCGACC- -5'
14560 3' -62.8 NC_003521.1 + 196999 0.66 0.736886
Target:  5'- cGCGGCCGGcGGCGgCUgaccCGGC-UGCUGc -3'
miRNA:   3'- aCGCUGGCC-CCGC-GA----GCUGcGCGACc -5'
14560 3' -62.8 NC_003521.1 + 224029 0.66 0.736886
Target:  5'- gGCGGUCGGGGCGggCGcCGuCGCcccUGGg -3'
miRNA:   3'- aCGCUGGCCCCGCgaGCuGC-GCG---ACC- -5'
14560 3' -62.8 NC_003521.1 + 208292 0.66 0.72787
Target:  5'- cGUGAgagauaCGGGGUGCUUGAucuCGaCGCUGa -3'
miRNA:   3'- aCGCUg-----GCCCCGCGAGCU---GC-GCGACc -5'
14560 3' -62.8 NC_003521.1 + 111173 0.66 0.72787
Target:  5'- cGCGGCCGccccGGCGa-CGGCGCcgcggacgguggGCUGGg -3'
miRNA:   3'- aCGCUGGCc---CCGCgaGCUGCG------------CGACC- -5'
14560 3' -62.8 NC_003521.1 + 191336 0.66 0.72787
Target:  5'- aGCGAUCaGGGCGC-CGACG-GCc-- -3'
miRNA:   3'- aCGCUGGcCCCGCGaGCUGCgCGacc -5'
14560 3' -62.8 NC_003521.1 + 80286 0.66 0.72787
Target:  5'- aGaCGA-CGGcGCGUcCGACGUGCUGGu -3'
miRNA:   3'- aC-GCUgGCCcCGCGaGCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 60648 0.66 0.72787
Target:  5'- cGCGACCugagcaucaaguGGGGCacgauGCUCuuCGUGCUGcGg -3'
miRNA:   3'- aCGCUGG------------CCCCG-----CGAGcuGCGCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 113843 0.66 0.72787
Target:  5'- aGCGGCagCGGGGCgGCcggCGACgacgGCGCgGGu -3'
miRNA:   3'- aCGCUG--GCCCCG-CGa--GCUG----CGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 150888 0.66 0.72787
Target:  5'- gUGCGGCCGcacgccGGCGUcaUCGACuGCGCg-- -3'
miRNA:   3'- -ACGCUGGCc-----CCGCG--AGCUG-CGCGacc -5'
14560 3' -62.8 NC_003521.1 + 116699 0.66 0.726059
Target:  5'- aGCGGCgCGGGcGgGaaucaccacagCGACGCGCUGc -3'
miRNA:   3'- aCGCUG-GCCC-CgCga---------GCUGCGCGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.