miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 162220 0.66 0.762571
Target:  5'- --aGACgGGGggugguaGCGC-CGACGgCGCUGGc -3'
miRNA:   3'- acgCUGgCCC-------CGCGaGCUGC-GCGACC- -5'
14560 3' -62.8 NC_003521.1 + 86594 0.66 0.75468
Target:  5'- cGCaGCCGGGgaagaaGCGCUCGugGUgGC-GGu -3'
miRNA:   3'- aCGcUGGCCC------CGCGAGCugCG-CGaCC- -5'
14560 3' -62.8 NC_003521.1 + 80139 0.66 0.75468
Target:  5'- uUGCGGCCGGugcuGCGCgucCaGC-CGCUGGa -3'
miRNA:   3'- -ACGCUGGCCc---CGCGa--GcUGcGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 143050 0.66 0.75468
Target:  5'- cGCGACCuGGauGGUGgUgGugGCGCcGGu -3'
miRNA:   3'- aCGCUGG-CC--CCGCgAgCugCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 139016 0.66 0.75468
Target:  5'- cGCGACCGcccccuGGGC-UUCGuGCGCGCccaacUGGa -3'
miRNA:   3'- aCGCUGGC------CCCGcGAGC-UGCGCG-----ACC- -5'
14560 3' -62.8 NC_003521.1 + 44068 0.66 0.75468
Target:  5'- cGcCGGCCGGGGCaGCa-GACgGUGCaGGc -3'
miRNA:   3'- aC-GCUGGCCCCG-CGagCUG-CGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 108282 0.66 0.75468
Target:  5'- gGCGgcACCGaGGGCGgUgGugGCGgUGa -3'
miRNA:   3'- aCGC--UGGC-CCCGCgAgCugCGCgACc -5'
14560 3' -62.8 NC_003521.1 + 39896 0.66 0.75468
Target:  5'- gGCGugCGgucgucccggcGGGCGCgaaa-GCGCUGGc -3'
miRNA:   3'- aCGCugGC-----------CCCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 200333 0.66 0.75468
Target:  5'- aUGCG-CUGcGGCGC-CGugGCGCgccgcGGa -3'
miRNA:   3'- -ACGCuGGCcCCGCGaGCugCGCGa----CC- -5'
14560 3' -62.8 NC_003521.1 + 103636 0.66 0.75468
Target:  5'- cGcCGACUccagcgGGGGCaGCUCGGCGgcggcCGCUGcGg -3'
miRNA:   3'- aC-GCUGG------CCCCG-CGAGCUGC-----GCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 89970 0.66 0.753798
Target:  5'- gGCGGCCguucGGGGUucaaccgGCggGugGCGCUGcGg -3'
miRNA:   3'- aCGCUGG----CCCCG-------CGagCugCGCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 142118 0.66 0.753798
Target:  5'- gUGCGACCuggagcuGGaGGCGgaCGACGCGg--- -3'
miRNA:   3'- -ACGCUGG-------CC-CCGCgaGCUGCGCgacc -5'
14560 3' -62.8 NC_003521.1 + 59617 0.66 0.753798
Target:  5'- gGCGGCCccGGcGGCgaccgcgGCUCGcAgGCGUUGGu -3'
miRNA:   3'- aCGCUGG--CC-CCG-------CGAGC-UgCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 193279 0.66 0.745825
Target:  5'- aGCGgguGCCGggacGGGCGUcggagUCGGCGCGggGGu -3'
miRNA:   3'- aCGC---UGGC----CCCGCG-----AGCUGCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 223934 0.66 0.745825
Target:  5'- cGCGGCCGaGGGgGUcgaggCGGC-CGCgGGg -3'
miRNA:   3'- aCGCUGGC-CCCgCGa----GCUGcGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 119628 0.66 0.745825
Target:  5'- cGCGAgaCCGuGGagauaCGCcaguaCGACGCGCUGGc -3'
miRNA:   3'- aCGCU--GGC-CCc----GCGa----GCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 55068 0.66 0.745825
Target:  5'- cGCGGCCccuaGGCGCUCcGGCGCacccGCUcGGc -3'
miRNA:   3'- aCGCUGGcc--CCGCGAG-CUGCG----CGA-CC- -5'
14560 3' -62.8 NC_003521.1 + 214562 0.66 0.745825
Target:  5'- gGUGcCUGGGGUGCagca-GCGCUGGc -3'
miRNA:   3'- aCGCuGGCCCCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 238469 0.66 0.745825
Target:  5'- gGCGGgCGGGGCGga-GACGCgGCccaGGg -3'
miRNA:   3'- aCGCUgGCCCCGCgagCUGCG-CGa--CC- -5'
14560 3' -62.8 NC_003521.1 + 18748 0.66 0.745825
Target:  5'- gGCGG-CGGuGGCGC-CGACGgguCGCUGc -3'
miRNA:   3'- aCGCUgGCC-CCGCGaGCUGC---GCGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.