miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 64862 0.71 0.47074
Target:  5'- aGCuGAaCGGGGCGC-CGACGUGCg-- -3'
miRNA:   3'- aCG-CUgGCCCCGCGaGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 96653 0.71 0.47074
Target:  5'- cGCGGCaGGcGGCGC-CGGCGUGCUu- -3'
miRNA:   3'- aCGCUGgCC-CCGCGaGCUGCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 133196 0.71 0.479386
Target:  5'- gGCGAUCGGGacgaccGCGgUCGGgGCGCgGGu -3'
miRNA:   3'- aCGCUGGCCC------CGCgAGCUgCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 127029 0.7 0.496907
Target:  5'- cGCcGCCGcGGUGCcCGuCGCGCUGGc -3'
miRNA:   3'- aCGcUGGCcCCGCGaGCuGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 117107 0.7 0.505775
Target:  5'- cGCGuCCGGGaugucacaucguGCGCUCGAUGaucgaccagcaGCUGGc -3'
miRNA:   3'- aCGCuGGCCC------------CGCGAGCUGCg----------CGACC- -5'
14560 3' -62.8 NC_003521.1 + 130356 0.7 0.51471
Target:  5'- gUGCGGCCGcaGGCGC-CGuGCGCGCUc- -3'
miRNA:   3'- -ACGCUGGCc-CCGCGaGC-UGCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 59222 0.7 0.523708
Target:  5'- --aGAUCGGGGCcCUgGACGCcCUGGa -3'
miRNA:   3'- acgCUGGCCCCGcGAgCUGCGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 91322 0.7 0.532767
Target:  5'- gUGCGcGCgGGGGCacGCgcaggCGAgGUGCUGGu -3'
miRNA:   3'- -ACGC-UGgCCCCG--CGa----GCUgCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 144052 0.7 0.536406
Target:  5'- gGCGcuucugcauggccgaGCUGGcGGCGCUgGgcaACGUGCUGGg -3'
miRNA:   3'- aCGC---------------UGGCC-CCGCGAgC---UGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 122692 0.7 0.54188
Target:  5'- gGUGAUCauGGGCGuCUCGGCgGgGCUGGa -3'
miRNA:   3'- aCGCUGGc-CCCGC-GAGCUG-CgCGACC- -5'
14560 3' -62.8 NC_003521.1 + 5840 0.7 0.54188
Target:  5'- gGCGACCGGGGCcCUuuuaugCGAUccggGCGCgGGc -3'
miRNA:   3'- aCGCUGGCCCCGcGA------GCUG----CGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 4314 0.69 0.550126
Target:  5'- gGaCGGCCGGGG-GCUCGACcguccauGC-CUGGc -3'
miRNA:   3'- aC-GCUGGCCCCgCGAGCUG-------CGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 168059 0.69 0.551045
Target:  5'- cGcCGACgGcGGGUGCUCGAgaCGCGggGGg -3'
miRNA:   3'- aC-GCUGgC-CCCGCGAGCU--GCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 222103 0.69 0.551045
Target:  5'- aGCG-CCGGcaGCGuCUCGAgGCGCUGc -3'
miRNA:   3'- aCGCuGGCCc-CGC-GAGCUgCGCGACc -5'
14560 3' -62.8 NC_003521.1 + 34519 0.69 0.560257
Target:  5'- aGCGGCCGcGGGCcga-GACGCGCgagcGGc -3'
miRNA:   3'- aCGCUGGC-CCCGcgagCUGCGCGa---CC- -5'
14560 3' -62.8 NC_003521.1 + 59258 0.69 0.560257
Target:  5'- gGCuGCUGcGGGCGUUCGuaaGCGCGCUa- -3'
miRNA:   3'- aCGcUGGC-CCCGCGAGC---UGCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 119046 0.69 0.560257
Target:  5'- gGCGGCguCGGGGUGCUgGA-GCGCUc- -3'
miRNA:   3'- aCGCUG--GCCCCGCGAgCUgCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 19906 0.69 0.560257
Target:  5'- gGCGugCGGGaGCgGCUgGugGUcCUGGa -3'
miRNA:   3'- aCGCugGCCC-CG-CGAgCugCGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 174416 0.69 0.568584
Target:  5'- aGCGACUGGcucaggcGGUGCagCGuuucacgcACGCGCUGGu -3'
miRNA:   3'- aCGCUGGCC-------CCGCGa-GC--------UGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 145012 0.69 0.569511
Target:  5'- cGCGcGCCGacauCGC-CGACGCGCUGGa -3'
miRNA:   3'- aCGC-UGGCccc-GCGaGCUGCGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.