miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 240123 0.66 0.736886
Target:  5'- gGCGugCGGucgucccggcgGGCGCggaaaGCGCUGGc -3'
miRNA:   3'- aCGCugGCC-----------CCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 122108 0.66 0.736886
Target:  5'- gUGCGGCUGcagcGGCGuCUCGcCGCgGCUGa -3'
miRNA:   3'- -ACGCUGGCc---CCGC-GAGCuGCG-CGACc -5'
14560 3' -62.8 NC_003521.1 + 38241 0.66 0.745825
Target:  5'- gGCGGgCGGGGCGga-GACGCGgCccagGGu -3'
miRNA:   3'- aCGCUgGCCCCGCgagCUGCGC-Ga---CC- -5'
14560 3' -62.8 NC_003521.1 + 36768 0.66 0.744935
Target:  5'- gUGCGACUGcGGCGaCUgGcagggccACGCGCUGcGg -3'
miRNA:   3'- -ACGCUGGCcCCGC-GAgC-------UGCGCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 113843 0.66 0.72787
Target:  5'- aGCGGCagCGGGGCgGCcggCGACgacgGCGCgGGu -3'
miRNA:   3'- aCGCUG--GCCCCG-CGa--GCUG----CGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 223934 0.66 0.745825
Target:  5'- cGCGGCCGaGGGgGUcgaggCGGC-CGCgGGg -3'
miRNA:   3'- aCGCUGGC-CCCgCGa----GCUGcGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 214562 0.66 0.745825
Target:  5'- gGUGcCUGGGGUGCagca-GCGCUGGc -3'
miRNA:   3'- aCGCuGGCCCCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 86381 0.66 0.736886
Target:  5'- gUGCGGaaGGGgaagaagggccaGCGgUCGACGCGggGGa -3'
miRNA:   3'- -ACGCUggCCC------------CGCgAGCUGCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 103309 0.66 0.763443
Target:  5'- cGCG-CCGGuacuccagcaGGCGCU-GACGCGCc-- -3'
miRNA:   3'- aCGCuGGCC----------CCGCGAgCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 116699 0.66 0.726059
Target:  5'- aGCGGCgCGGGcGgGaaucaccacagCGACGCGCUGc -3'
miRNA:   3'- aCGCUG-GCCC-CgCga---------GCUGCGCGACc -5'
14560 3' -62.8 NC_003521.1 + 108282 0.66 0.75468
Target:  5'- gGCGgcACCGaGGGCGgUgGugGCGgUGa -3'
miRNA:   3'- aCGC--UGGC-CCCGCgAgCugCGCgACc -5'
14560 3' -62.8 NC_003521.1 + 113340 0.66 0.745825
Target:  5'- cUGCGACUGGugacGCGCaucUCG--GCGCUGGc -3'
miRNA:   3'- -ACGCUGGCCc---CGCG---AGCugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 191336 0.66 0.72787
Target:  5'- aGCGAUCaGGGCGC-CGACG-GCc-- -3'
miRNA:   3'- aCGCUGGcCCCGCGaGCUGCgCGacc -5'
14560 3' -62.8 NC_003521.1 + 80286 0.66 0.72787
Target:  5'- aGaCGA-CGGcGCGUcCGACGUGCUGGu -3'
miRNA:   3'- aC-GCUgGCCcCGCGaGCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 60648 0.66 0.72787
Target:  5'- cGCGACCugagcaucaaguGGGGCacgauGCUCuuCGUGCUGcGg -3'
miRNA:   3'- aCGCUGG------------CCCCG-----CGAGcuGCGCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 164202 0.66 0.736886
Target:  5'- gGCGGaacggCGGGGCgGCggugguagCGGCG-GCUGGa -3'
miRNA:   3'- aCGCUg----GCCCCG-CGa-------GCUGCgCGACC- -5'
14560 3' -62.8 NC_003521.1 + 111173 0.66 0.72787
Target:  5'- cGCGGCCGccccGGCGa-CGGCGCcgcggacgguggGCUGGg -3'
miRNA:   3'- aCGCUGGCc---CCGCgaGCUGCG------------CGACC- -5'
14560 3' -62.8 NC_003521.1 + 208292 0.66 0.72787
Target:  5'- cGUGAgagauaCGGGGUGCUUGAucuCGaCGCUGa -3'
miRNA:   3'- aCGCUg-----GCCCCGCGAGCU---GC-GCGACc -5'
14560 3' -62.8 NC_003521.1 + 131323 0.66 0.740471
Target:  5'- aGCGGCCGgcgcgaccacucgcuGGaGCGCcUGGCGCGCa-- -3'
miRNA:   3'- aCGCUGGC---------------CC-CGCGaGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 185095 0.66 0.772109
Target:  5'- cGCGcGCUGGgaGGCGCUgcgcgcCGACaUGCUGGa -3'
miRNA:   3'- aCGC-UGGCC--CCGCGA------GCUGcGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.