miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 224029 0.66 0.736886
Target:  5'- gGCGGUCGGGGCGggCGcCGuCGCcccUGGg -3'
miRNA:   3'- aCGCUGGCCCCGCgaGCuGC-GCG---ACC- -5'
14560 3' -62.8 NC_003521.1 + 193279 0.66 0.745825
Target:  5'- aGCGgguGCCGggacGGGCGUcggagUCGGCGCGggGGu -3'
miRNA:   3'- aCGC---UGGC----CCCGCG-----AGCUGCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 122108 0.66 0.736886
Target:  5'- gUGCGGCUGcagcGGCGuCUCGcCGCgGCUGa -3'
miRNA:   3'- -ACGCUGGCc---CCGC-GAGCuGCG-CGACc -5'
14560 3' -62.8 NC_003521.1 + 80286 0.66 0.72787
Target:  5'- aGaCGA-CGGcGCGUcCGACGUGCUGGu -3'
miRNA:   3'- aC-GCUgGCCcCGCGaGCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 111173 0.66 0.72787
Target:  5'- cGCGGCCGccccGGCGa-CGGCGCcgcggacgguggGCUGGg -3'
miRNA:   3'- aCGCUGGCc---CCGCgaGCUGCG------------CGACC- -5'
14560 3' -62.8 NC_003521.1 + 60648 0.66 0.72787
Target:  5'- cGCGACCugagcaucaaguGGGGCacgauGCUCuuCGUGCUGcGg -3'
miRNA:   3'- aCGCUGG------------CCCCG-----CGAGcuGCGCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 208292 0.66 0.72787
Target:  5'- cGUGAgagauaCGGGGUGCUUGAucuCGaCGCUGa -3'
miRNA:   3'- aCGCUg-----GCCCCGCGAGCU---GC-GCGACc -5'
14560 3' -62.8 NC_003521.1 + 240123 0.66 0.736886
Target:  5'- gGCGugCGGucgucccggcgGGCGCggaaaGCGCUGGc -3'
miRNA:   3'- aCGCugGCC-----------CCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 238469 0.66 0.745825
Target:  5'- gGCGGgCGGGGCGga-GACGCgGCccaGGg -3'
miRNA:   3'- aCGCUgGCCCCGCgagCUGCG-CGa--CC- -5'
14560 3' -62.8 NC_003521.1 + 18748 0.66 0.745825
Target:  5'- gGCGG-CGGuGGCGC-CGACGgguCGCUGc -3'
miRNA:   3'- aCGCUgGCC-CCGCGaGCUGC---GCGACc -5'
14560 3' -62.8 NC_003521.1 + 185095 0.66 0.772109
Target:  5'- cGCGcGCUGGgaGGCGCUgcgcgcCGACaUGCUGGa -3'
miRNA:   3'- aCGC-UGGCC--CCGCGA------GCUGcGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 59617 0.66 0.753798
Target:  5'- gGCGGCCccGGcGGCgaccgcgGCUCGcAgGCGUUGGu -3'
miRNA:   3'- aCGCUGG--CC-CCG-------CGAGC-UgCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 142118 0.66 0.753798
Target:  5'- gUGCGACCuggagcuGGaGGCGgaCGACGCGg--- -3'
miRNA:   3'- -ACGCUGG-------CC-CCGCgaGCUGCGCgacc -5'
14560 3' -62.8 NC_003521.1 + 104967 0.66 0.736886
Target:  5'- gUGCcGCgGGGGCGCcgcgaGACGuCGgaGGa -3'
miRNA:   3'- -ACGcUGgCCCCGCGag---CUGC-GCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 191336 0.66 0.72787
Target:  5'- aGCGAUCaGGGCGC-CGACG-GCc-- -3'
miRNA:   3'- aCGCUGGcCCCGCGaGCUGCgCGacc -5'
14560 3' -62.8 NC_003521.1 + 55068 0.66 0.745825
Target:  5'- cGCGGCCccuaGGCGCUCcGGCGCacccGCUcGGc -3'
miRNA:   3'- aCGCUGGcc--CCGCGAG-CUGCG----CGA-CC- -5'
14560 3' -62.8 NC_003521.1 + 86594 0.66 0.75468
Target:  5'- cGCaGCCGGGgaagaaGCGCUCGugGUgGC-GGu -3'
miRNA:   3'- aCGcUGGCCC------CGCGAGCugCG-CGaCC- -5'
14560 3' -62.8 NC_003521.1 + 150888 0.66 0.72787
Target:  5'- gUGCGGCCGcacgccGGCGUcaUCGACuGCGCg-- -3'
miRNA:   3'- -ACGCUGGCc-----CCGCG--AGCUG-CGCGacc -5'
14560 3' -62.8 NC_003521.1 + 89970 0.66 0.753798
Target:  5'- gGCGGCCguucGGGGUucaaccgGCggGugGCGCUGcGg -3'
miRNA:   3'- aCGCUGG----CCCCG-------CGagCugCGCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 80139 0.66 0.75468
Target:  5'- uUGCGGCCGGugcuGCGCgucCaGC-CGCUGGa -3'
miRNA:   3'- -ACGCUGGCCc---CGCGa--GcUGcGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.