miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 4314 0.69 0.550126
Target:  5'- gGaCGGCCGGGG-GCUCGACcguccauGC-CUGGc -3'
miRNA:   3'- aC-GCUGGCCCCgCGAGCUG-------CGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 5840 0.7 0.54188
Target:  5'- gGCGACCGGGGCcCUuuuaugCGAUccggGCGCgGGc -3'
miRNA:   3'- aCGCUGGCCCCGcGA------GCUG----CGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 7972 0.67 0.663203
Target:  5'- cGCGGCCGGGaGgGUccgCGGCG-GCgGGg -3'
miRNA:   3'- aCGCUGGCCC-CgCGa--GCUGCgCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 12414 0.68 0.605909
Target:  5'- gGCuGACCGGGGCuGCgucaucuucuacuUCGACGUGUUu- -3'
miRNA:   3'- aCG-CUGGCCCCG-CG-------------AGCUGCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 13878 0.75 0.289594
Target:  5'- gGCGccgccauggauuucGCCGGGGgGCcCGGCGCGgaGGg -3'
miRNA:   3'- aCGC--------------UGGCCCCgCGaGCUGCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 14760 0.84 0.071652
Target:  5'- cGCGGCCGGGGCGCgccuucguggcCGAgGUGCUGGu -3'
miRNA:   3'- aCGCUGGCCCCGCGa----------GCUgCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 14936 0.68 0.635034
Target:  5'- cGCGAgCGGcaGCGC-CaGACGCGCaUGGa -3'
miRNA:   3'- aCGCUgGCCc-CGCGaG-CUGCGCG-ACC- -5'
14560 3' -62.8 NC_003521.1 + 15319 0.67 0.681887
Target:  5'- gGCG-CCGagcGGGUGaUCaGCGCGCUGGu -3'
miRNA:   3'- aCGCuGGC---CCCGCgAGcUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 16058 0.67 0.690253
Target:  5'- gGCGcugcugcacaacuGCCGGaGCcC-CGACGCGCUGGc -3'
miRNA:   3'- aCGC-------------UGGCCcCGcGaGCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 16507 0.68 0.653826
Target:  5'- aGCacgGGCUGcGGCGCUCGGCuCgGCUGGa -3'
miRNA:   3'- aCG---CUGGCcCCGCGAGCUGcG-CGACC- -5'
14560 3' -62.8 NC_003521.1 + 17444 0.74 0.317258
Target:  5'- cGCG-UCGGGGCGCcgCGAUGuCGCUGc -3'
miRNA:   3'- aCGCuGGCCCCGCGa-GCUGC-GCGACc -5'
14560 3' -62.8 NC_003521.1 + 17783 0.67 0.672559
Target:  5'- -aUGACCuGGaGGCcgUCGGCGUGCUGGc -3'
miRNA:   3'- acGCUGG-CC-CCGcgAGCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 18748 0.66 0.745825
Target:  5'- gGCGG-CGGuGGCGC-CGACGgguCGCUGc -3'
miRNA:   3'- aCGCUgGCC-CCGCGaGCUGC---GCGACc -5'
14560 3' -62.8 NC_003521.1 + 19657 0.66 0.772109
Target:  5'- gUGUGcCUGGGGCuGCU----GCGCUGGg -3'
miRNA:   3'- -ACGCuGGCCCCG-CGAgcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 19906 0.69 0.560257
Target:  5'- gGCGugCGGGaGCgGCUgGugGUcCUGGa -3'
miRNA:   3'- aCGCugGCCC-CG-CGAgCugCGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 21765 0.66 0.772109
Target:  5'- aUGC-ACCuGGGCGC-CGugGCGUg-- -3'
miRNA:   3'- -ACGcUGGcCCCGCGaGCugCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 22190 0.67 0.681887
Target:  5'- cGcCGGCCGuGGcCGCUuacCGccGCGCGCUGGc -3'
miRNA:   3'- aC-GCUGGCcCC-GCGA---GC--UGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 27561 0.68 0.635034
Target:  5'- cGuCGuCC-GGGCGgUCGACGCGUcGGa -3'
miRNA:   3'- aC-GCuGGcCCCGCgAGCUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 30452 0.75 0.297753
Target:  5'- gGCGGCCGaGGGUGCcgaUGACGCGCa-- -3'
miRNA:   3'- aCGCUGGC-CCCGCGa--GCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 31015 0.67 0.709636
Target:  5'- gGCG-CCGGcgaggacGCGUUCGugGUGgUGGg -3'
miRNA:   3'- aCGCuGGCCc------CGCGAGCugCGCgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.