miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 240123 0.66 0.736886
Target:  5'- gGCGugCGGucgucccggcgGGCGCggaaaGCGCUGGc -3'
miRNA:   3'- aCGCugGCC-----------CCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 239730 0.67 0.679092
Target:  5'- gGUGGCCaccagcacgauccaGGGGuCGCgCGGCGagaGCUGGc -3'
miRNA:   3'- aCGCUGG--------------CCCC-GCGaGCUGCg--CGACC- -5'
14560 3' -62.8 NC_003521.1 + 238469 0.66 0.745825
Target:  5'- gGCGGgCGGGGCGga-GACGCgGCccaGGg -3'
miRNA:   3'- aCGCUgGCCCCGCgagCUGCG-CGa--CC- -5'
14560 3' -62.8 NC_003521.1 + 228052 0.66 0.772109
Target:  5'- gGUaAUCGGGGCGC---ACGCGCgGGu -3'
miRNA:   3'- aCGcUGGCCCCGCGagcUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 224797 0.66 0.763443
Target:  5'- cGuCGugCGGGaCGCgCGugGCGUaGGg -3'
miRNA:   3'- aC-GCugGCCCcGCGaGCugCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 224029 0.66 0.736886
Target:  5'- gGCGGUCGGGGCGggCGcCGuCGCcccUGGg -3'
miRNA:   3'- aCGCUGGCCCCGCgaGCuGC-GCG---ACC- -5'
14560 3' -62.8 NC_003521.1 + 223934 0.66 0.745825
Target:  5'- cGCGGCCGaGGGgGUcgaggCGGC-CGCgGGg -3'
miRNA:   3'- aCGCUGGC-CCCgCGa----GCUGcGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 222230 0.67 0.718785
Target:  5'- cGCGGCUGGGcCGCaggaaccagUCGAgCGCGCUc- -3'
miRNA:   3'- aCGCUGGCCCcGCG---------AGCU-GCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 222103 0.69 0.551045
Target:  5'- aGCG-CCGGcaGCGuCUCGAgGCGCUGc -3'
miRNA:   3'- aCGCuGGCCc-CGC-GAGCUgCGCGACc -5'
14560 3' -62.8 NC_003521.1 + 221890 0.72 0.42876
Target:  5'- gGCGugUGGGGCggauuGC-CGGCGCGC-GGc -3'
miRNA:   3'- aCGCugGCCCCG-----CGaGCUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 218814 0.72 0.420632
Target:  5'- gGCG-UCGGGGUGC-CGACGUGCg-- -3'
miRNA:   3'- aCGCuGGCCCCGCGaGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 218233 0.66 0.763443
Target:  5'- gGCGACCgcaGGGGcCGUcacgggugCGACGCGUcaGGa -3'
miRNA:   3'- aCGCUGG---CCCC-GCGa-------GCUGCGCGa-CC- -5'
14560 3' -62.8 NC_003521.1 + 214562 0.66 0.745825
Target:  5'- gGUGcCUGGGGUGCagca-GCGCUGGc -3'
miRNA:   3'- aCGCuGGCCCCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 213076 0.67 0.666948
Target:  5'- gGCGGaCGGcaaguuuuauauagaGGaggagacgcgGCUCGACGCGCUGGg -3'
miRNA:   3'- aCGCUgGCC---------------CCg---------CGAGCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 208292 0.66 0.72787
Target:  5'- cGUGAgagauaCGGGGUGCUUGAucuCGaCGCUGa -3'
miRNA:   3'- aCGCUg-----GCCCCGCGAGCU---GC-GCGACc -5'
14560 3' -62.8 NC_003521.1 + 207664 0.67 0.678159
Target:  5'- cGUGGCCGaGGCcgacgagGCcaacggcuucgucaUCGGCGUGCUGGa -3'
miRNA:   3'- aCGCUGGCcCCG-------CG--------------AGCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 200378 0.68 0.606847
Target:  5'- cGCGACCGGGcuagaGCGCgCGAgcaccuggcCGUGgUGGa -3'
miRNA:   3'- aCGCUGGCCC-----CGCGaGCU---------GCGCgACC- -5'
14560 3' -62.8 NC_003521.1 + 200333 0.66 0.75468
Target:  5'- aUGCG-CUGcGGCGC-CGugGCGCgccgcGGa -3'
miRNA:   3'- -ACGCuGGCcCCGCGaGCugCGCGa----CC- -5'
14560 3' -62.8 NC_003521.1 + 197280 0.66 0.772109
Target:  5'- gGCGGCgGGGaGCgggagggcgGCUCGACGgGagagGGg -3'
miRNA:   3'- aCGCUGgCCC-CG---------CGAGCUGCgCga--CC- -5'
14560 3' -62.8 NC_003521.1 + 196999 0.66 0.736886
Target:  5'- cGCGGCCGGcGGCGgCUgaccCGGC-UGCUGc -3'
miRNA:   3'- aCGCUGGCC-CCGC-GA----GCUGcGCGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.