miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 222103 0.69 0.551045
Target:  5'- aGCG-CCGGcaGCGuCUCGAgGCGCUGc -3'
miRNA:   3'- aCGCuGGCCc-CGC-GAGCUgCGCGACc -5'
14560 3' -62.8 NC_003521.1 + 133196 0.71 0.479386
Target:  5'- gGCGAUCGGGacgaccGCGgUCGGgGCGCgGGu -3'
miRNA:   3'- aCGCUGGCCC------CGCgAGCUgCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 127029 0.7 0.496907
Target:  5'- cGCcGCCGcGGUGCcCGuCGCGCUGGc -3'
miRNA:   3'- aCGcUGGCcCCGCGaGCuGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 130356 0.7 0.51471
Target:  5'- gUGCGGCCGcaGGCGC-CGuGCGCGCUc- -3'
miRNA:   3'- -ACGCUGGCc-CCGCGaGC-UGCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 59222 0.7 0.523708
Target:  5'- --aGAUCGGGGCcCUgGACGCcCUGGa -3'
miRNA:   3'- acgCUGGCCCCGcGAgCUGCGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 91322 0.7 0.532767
Target:  5'- gUGCGcGCgGGGGCacGCgcaggCGAgGUGCUGGu -3'
miRNA:   3'- -ACGC-UGgCCCCG--CGa----GCUgCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 144052 0.7 0.536406
Target:  5'- gGCGcuucugcauggccgaGCUGGcGGCGCUgGgcaACGUGCUGGg -3'
miRNA:   3'- aCGC---------------UGGCC-CCGCGAgC---UGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 5840 0.7 0.54188
Target:  5'- gGCGACCGGGGCcCUuuuaugCGAUccggGCGCgGGc -3'
miRNA:   3'- aCGCUGGCCCCGcGA------GCUG----CGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 4314 0.69 0.550126
Target:  5'- gGaCGGCCGGGG-GCUCGACcguccauGC-CUGGc -3'
miRNA:   3'- aC-GCUGGCCCCgCGAGCUG-------CGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 64862 0.71 0.47074
Target:  5'- aGCuGAaCGGGGCGC-CGACGUGCg-- -3'
miRNA:   3'- aCG-CUgGCCCCGCGaGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 144920 0.71 0.45369
Target:  5'- gGUGGCCGaGGaguucaugucGCGCgUCGcCGCGCUGGc -3'
miRNA:   3'- aCGCUGGC-CC----------CGCG-AGCuGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 221890 0.72 0.42876
Target:  5'- gGCGugUGGGGCggauuGC-CGGCGCGC-GGc -3'
miRNA:   3'- aCGCugGCCCCG-----CGaGCUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 30452 0.75 0.297753
Target:  5'- gGCGGCCGaGGGUGCcgaUGACGCGCa-- -3'
miRNA:   3'- aCGCUGGC-CCCGCGa--GCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 79627 0.73 0.359103
Target:  5'- gGCGACCGcGGCGcCUCGGCGUcgucuGCUGc -3'
miRNA:   3'- aCGCUGGCcCCGC-GAGCUGCG-----CGACc -5'
14560 3' -62.8 NC_003521.1 + 136921 0.72 0.404657
Target:  5'- gUGgGACCaGGGGCGC-CaGCGUGaCUGGg -3'
miRNA:   3'- -ACgCUGG-CCCCGCGaGcUGCGC-GACC- -5'
14560 3' -62.8 NC_003521.1 + 88005 0.72 0.412596
Target:  5'- --aGACCaGGGCGCU-GACGUGCgUGGa -3'
miRNA:   3'- acgCUGGcCCCGCGAgCUGCGCG-ACC- -5'
14560 3' -62.8 NC_003521.1 + 102844 0.72 0.420632
Target:  5'- aGCGcGCCaGGGCGCcCGugGCGUaGGu -3'
miRNA:   3'- aCGC-UGGcCCCGCGaGCugCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 218814 0.72 0.420632
Target:  5'- gGCG-UCGGGGUGC-CGACGUGCg-- -3'
miRNA:   3'- aCGCuGGCCCCGCGaGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 113693 0.72 0.420632
Target:  5'- cUGCGccGCCuGGaGGUGCaCGACGCGCUGc -3'
miRNA:   3'- -ACGC--UGG-CC-CCGCGaGCUGCGCGACc -5'
14560 3' -62.8 NC_003521.1 + 74182 0.72 0.42876
Target:  5'- cUGCG-CCGcGGCGCcCGGCGCGC-GGc -3'
miRNA:   3'- -ACGCuGGCcCCGCGaGCUGCGCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.