miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 14760 0.84 0.071652
Target:  5'- cGCGGCCGGGGCGCgccuucguggcCGAgGUGCUGGu -3'
miRNA:   3'- aCGCUGGCCCCGCGa----------GCUgCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 147859 0.69 0.597475
Target:  5'- gGUuGCUGGGGgGCcCGAUGgUGCUGGg -3'
miRNA:   3'- aCGcUGGCCCCgCGaGCUGC-GCGACC- -5'
14560 3' -62.8 NC_003521.1 + 77716 0.68 0.606847
Target:  5'- gGCGGC---GGUGgUCGugGCGCUGGc -3'
miRNA:   3'- aCGCUGgccCCGCgAGCugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 185095 0.66 0.772109
Target:  5'- cGCGcGCUGGgaGGCGCUgcgcgcCGACaUGCUGGa -3'
miRNA:   3'- aCGC-UGGCC--CCGCGA------GCUGcGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 162344 0.73 0.381426
Target:  5'- gGCGACUGcGGGCGUg-GGCGCGCa-- -3'
miRNA:   3'- aCGCUGGC-CCCGCGagCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 196972 0.72 0.396815
Target:  5'- aGcCGGCCGGGGCGCcugUGACGgGCc-- -3'
miRNA:   3'- aC-GCUGGCCCCGCGa--GCUGCgCGacc -5'
14560 3' -62.8 NC_003521.1 + 46388 0.71 0.45369
Target:  5'- aGgGGCgCGGGGUGCguggGGCGCGCgGGc -3'
miRNA:   3'- aCgCUG-GCCCCGCGag--CUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 37394 0.71 0.46047
Target:  5'- gGCGGCgGGGGCGCccgggccuugugCGACG-GcCUGGg -3'
miRNA:   3'- aCGCUGgCCCCGCGa-----------GCUGCgC-GACC- -5'
14560 3' -62.8 NC_003521.1 + 122692 0.7 0.54188
Target:  5'- gGUGAUCauGGGCGuCUCGGCgGgGCUGGa -3'
miRNA:   3'- aCGCUGGc-CCCGC-GAGCUG-CgCGACC- -5'
14560 3' -62.8 NC_003521.1 + 125724 0.69 0.588125
Target:  5'- -aCGACgGGGGCGg-CGACGgCGCaGGg -3'
miRNA:   3'- acGCUGgCCCCGCgaGCUGC-GCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 174416 0.69 0.568584
Target:  5'- aGCGACUGGcucaggcGGUGCagCGuuucacgcACGCGCUGGu -3'
miRNA:   3'- aCGCUGGCC-------CCGCGa-GC--------UGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 117107 0.7 0.505775
Target:  5'- cGCGuCCGGGaugucacaucguGCGCUCGAUGaucgaccagcaGCUGGc -3'
miRNA:   3'- aCGCuGGCCC------------CGCGAGCUGCg----------CGACC- -5'
14560 3' -62.8 NC_003521.1 + 13878 0.75 0.289594
Target:  5'- gGCGccgccauggauuucGCCGGGGgGCcCGGCGCGgaGGg -3'
miRNA:   3'- aCGC--------------UGGCCCCgCGaGCUGCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 78461 0.69 0.569511
Target:  5'- cGCGGCUGGGaaCGCggccCGGCGCGCg-- -3'
miRNA:   3'- aCGCUGGCCCc-GCGa---GCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 17444 0.74 0.317258
Target:  5'- cGCG-UCGGGGCGCcgCGAUGuCGCUGc -3'
miRNA:   3'- aCGCuGGCCCCGCGa-GCUGC-GCGACc -5'
14560 3' -62.8 NC_003521.1 + 96653 0.71 0.47074
Target:  5'- cGCGGCaGGcGGCGC-CGGCGUGCUu- -3'
miRNA:   3'- aCGCUGgCC-CCGCGaGCUGCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 97512 0.69 0.587191
Target:  5'- aGCGAgaccucgcagagcUCGGGGUGgUCGAgGCGCUc- -3'
miRNA:   3'- aCGCU-------------GGCCCCGCgAGCUgCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 12414 0.68 0.605909
Target:  5'- gGCuGACCGGGGCuGCgucaucuucuacuUCGACGUGUUu- -3'
miRNA:   3'- aCG-CUGGCCCCG-CG-------------AGCUGCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 141095 0.73 0.366442
Target:  5'- aGCGGCUGGGuGCGCgaCGACGC-CUGc -3'
miRNA:   3'- aCGCUGGCCC-CGCGa-GCUGCGcGACc -5'
14560 3' -62.8 NC_003521.1 + 183424 0.72 0.404657
Target:  5'- gGCGACCGcacGGCGCuguggcgcgagaUCGACGCcCUGGc -3'
miRNA:   3'- aCGCUGGCc--CCGCG------------AGCUGCGcGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.