miRNA display CGI


Results 1 - 20 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 191520 1.09 0.001451
Target:  5'- aUGCGACCGGGGCGCUCGACGCGCUGGc -3'
miRNA:   3'- -ACGCUGGCCCCGCGAGCUGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 14760 0.84 0.071652
Target:  5'- cGCGGCCGGGGCGCgccuucguggcCGAgGUGCUGGu -3'
miRNA:   3'- aCGCUGGCCCCGCGa----------GCUgCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 13878 0.75 0.289594
Target:  5'- gGCGccgccauggauuucGCCGGGGgGCcCGGCGCGgaGGg -3'
miRNA:   3'- aCGC--------------UGGCCCCgCGaGCUGCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 30452 0.75 0.297753
Target:  5'- gGCGGCCGaGGGUGCcgaUGACGCGCa-- -3'
miRNA:   3'- aCGCUGGC-CCCGCGa--GCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 17444 0.74 0.317258
Target:  5'- cGCG-UCGGGGCGCcgCGAUGuCGCUGc -3'
miRNA:   3'- aCGCuGGCCCCGCGa-GCUGC-GCGACc -5'
14560 3' -62.8 NC_003521.1 + 79627 0.73 0.359103
Target:  5'- gGCGACCGcGGCGcCUCGGCGUcgucuGCUGc -3'
miRNA:   3'- aCGCUGGCcCCGC-GAGCUGCG-----CGACc -5'
14560 3' -62.8 NC_003521.1 + 141095 0.73 0.366442
Target:  5'- aGCGGCUGGGuGCGCgaCGACGC-CUGc -3'
miRNA:   3'- aCGCUGGCCC-CGCGa-GCUGCGcGACc -5'
14560 3' -62.8 NC_003521.1 + 162344 0.73 0.381426
Target:  5'- gGCGACUGcGGGCGUg-GGCGCGCa-- -3'
miRNA:   3'- aCGCUGGC-CCCGCGagCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 196972 0.72 0.396815
Target:  5'- aGcCGGCCGGGGCGCcugUGACGgGCc-- -3'
miRNA:   3'- aC-GCUGGCCCCGCGa--GCUGCgCGacc -5'
14560 3' -62.8 NC_003521.1 + 136921 0.72 0.404657
Target:  5'- gUGgGACCaGGGGCGC-CaGCGUGaCUGGg -3'
miRNA:   3'- -ACgCUGG-CCCCGCGaGcUGCGC-GACC- -5'
14560 3' -62.8 NC_003521.1 + 183424 0.72 0.404657
Target:  5'- gGCGACCGcacGGCGCuguggcgcgagaUCGACGCcCUGGc -3'
miRNA:   3'- aCGCUGGCc--CCGCG------------AGCUGCGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 88005 0.72 0.412596
Target:  5'- --aGACCaGGGCGCU-GACGUGCgUGGa -3'
miRNA:   3'- acgCUGGcCCCGCGAgCUGCGCG-ACC- -5'
14560 3' -62.8 NC_003521.1 + 113693 0.72 0.420632
Target:  5'- cUGCGccGCCuGGaGGUGCaCGACGCGCUGc -3'
miRNA:   3'- -ACGC--UGG-CC-CCGCGaGCUGCGCGACc -5'
14560 3' -62.8 NC_003521.1 + 218814 0.72 0.420632
Target:  5'- gGCG-UCGGGGUGC-CGACGUGCg-- -3'
miRNA:   3'- aCGCuGGCCCCGCGaGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 102844 0.72 0.420632
Target:  5'- aGCGcGCCaGGGCGCcCGugGCGUaGGu -3'
miRNA:   3'- aCGC-UGGcCCCGCGaGCugCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 74182 0.72 0.42876
Target:  5'- cUGCG-CCGcGGCGCcCGGCGCGC-GGc -3'
miRNA:   3'- -ACGCuGGCcCCGCGaGCUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 221890 0.72 0.42876
Target:  5'- gGCGugUGGGGCggauuGC-CGGCGCGC-GGc -3'
miRNA:   3'- aCGCugGCCCCG-----CGaGCUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 46388 0.71 0.45369
Target:  5'- aGgGGCgCGGGGUGCguggGGCGCGCgGGc -3'
miRNA:   3'- aCgCUG-GCCCCGCGag--CUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 144920 0.71 0.45369
Target:  5'- gGUGGCCGaGGaguucaugucGCGCgUCGcCGCGCUGGc -3'
miRNA:   3'- aCGCUGGC-CC----------CGCG-AGCuGCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 37394 0.71 0.46047
Target:  5'- gGCGGCgGGGGCGCccgggccuugugCGACG-GcCUGGg -3'
miRNA:   3'- aCGCUGgCCCCGCGa-----------GCUGCgC-GACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.