miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 34519 0.69 0.560257
Target:  5'- aGCGGCCGcGGGCcga-GACGCGCgagcGGc -3'
miRNA:   3'- aCGCUGGC-CCCGcgagCUGCGCGa---CC- -5'
14560 3' -62.8 NC_003521.1 + 36246 0.66 0.763443
Target:  5'- -cCGACUGccGGCGCgCGACGUGgUGGa -3'
miRNA:   3'- acGCUGGCc-CCGCGaGCUGCGCgACC- -5'
14560 3' -62.8 NC_003521.1 + 36343 0.68 0.644434
Target:  5'- aUGCGACUuuaGGGGCucggGCUggCGugGCGC-GGc -3'
miRNA:   3'- -ACGCUGG---CCCCG----CGA--GCugCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 36768 0.66 0.744935
Target:  5'- gUGCGACUGcGGCGaCUgGcagggccACGCGCUGcGg -3'
miRNA:   3'- -ACGCUGGCcCCGC-GAgC-------UGCGCGAC-C- -5'
14560 3' -62.8 NC_003521.1 + 37394 0.71 0.46047
Target:  5'- gGCGGCgGGGGCGCccgggccuugugCGACG-GcCUGGg -3'
miRNA:   3'- aCGCUGgCCCCGCGa-----------GCUGCgC-GACC- -5'
14560 3' -62.8 NC_003521.1 + 38241 0.66 0.745825
Target:  5'- gGCGGgCGGGGCGga-GACGCGgCccagGGu -3'
miRNA:   3'- aCGCUgGCCCCGCgagCUGCGC-Ga---CC- -5'
14560 3' -62.8 NC_003521.1 + 39503 0.67 0.679092
Target:  5'- gGUGGCCaccagcacgauccaGGGGuCGCgCGGCGagaGCUGGc -3'
miRNA:   3'- aCGCUGG--------------CCCC-GCGaGCUGCg--CGACC- -5'
14560 3' -62.8 NC_003521.1 + 39896 0.66 0.75468
Target:  5'- gGCGugCGgucgucccggcGGGCGCgaaa-GCGCUGGc -3'
miRNA:   3'- aCGCugGC-----------CCCGCGagcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 43127 0.69 0.597475
Target:  5'- gGCGAgCGcucGGCGCUgGGCGUGgaGGu -3'
miRNA:   3'- aCGCUgGCc--CCGCGAgCUGCGCgaCC- -5'
14560 3' -62.8 NC_003521.1 + 44068 0.66 0.75468
Target:  5'- cGcCGGCCGGGGCaGCa-GACgGUGCaGGc -3'
miRNA:   3'- aC-GCUGGCCCCG-CGagCUG-CGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 44307 0.68 0.635034
Target:  5'- cGUGACguaCGGGGUGCU-GAagcagGUGCUGGg -3'
miRNA:   3'- aCGCUG---GCCCCGCGAgCUg----CGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 46388 0.71 0.45369
Target:  5'- aGgGGCgCGGGGUGCguggGGCGCGCgGGc -3'
miRNA:   3'- aCgCUG-GCCCCGCGag--CUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 47246 0.66 0.772109
Target:  5'- cGCGACCGGGuGauCUgCGAgGUGgUGGc -3'
miRNA:   3'- aCGCUGGCCC-CgcGA-GCUgCGCgACC- -5'
14560 3' -62.8 NC_003521.1 + 49260 0.67 0.672559
Target:  5'- gUGUGAaaugaCGuGGGCGCUUGACGU--UGGa -3'
miRNA:   3'- -ACGCUg----GC-CCCGCGAGCUGCGcgACC- -5'
14560 3' -62.8 NC_003521.1 + 55068 0.66 0.745825
Target:  5'- cGCGGCCccuaGGCGCUCcGGCGCacccGCUcGGc -3'
miRNA:   3'- aCGCUGGcc--CCGCGAG-CUGCG----CGA-CC- -5'
14560 3' -62.8 NC_003521.1 + 56031 0.68 0.653826
Target:  5'- gGCGGCCaccaGGGCGUccaGGCGCGCg-- -3'
miRNA:   3'- aCGCUGGc---CCCGCGag-CUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 59222 0.7 0.523708
Target:  5'- --aGAUCGGGGCcCUgGACGCcCUGGa -3'
miRNA:   3'- acgCUGGCCCCGcGAgCUGCGcGACC- -5'
14560 3' -62.8 NC_003521.1 + 59258 0.69 0.560257
Target:  5'- gGCuGCUGcGGGCGUUCGuaaGCGCGCUa- -3'
miRNA:   3'- aCGcUGGC-CCCGCGAGC---UGCGCGAcc -5'
14560 3' -62.8 NC_003521.1 + 59617 0.66 0.753798
Target:  5'- gGCGGCCccGGcGGCgaccgcgGCUCGcAgGCGUUGGu -3'
miRNA:   3'- aCGCUGG--CC-CCG-------CGAGC-UgCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 60648 0.66 0.72787
Target:  5'- cGCGACCugagcaucaaguGGGGCacgauGCUCuuCGUGCUGcGg -3'
miRNA:   3'- aCGCUGG------------CCCCG-----CGAGcuGCGCGAC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.