miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 142999 0.67 0.96534
Target:  5'- -aCCGGCgGUCGcGcCGUCCGCGUCAa- -3'
miRNA:   3'- aaGGUUG-CAGUuC-GCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 224678 0.67 0.96534
Target:  5'- cUUCAGCGUCuuggcguGGCGCCCGgG-CGUg -3'
miRNA:   3'- aAGGUUGCAGu------UCGCGGGUgCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 34367 0.67 0.96197
Target:  5'- -aCCGAUGgggCAAuccccCGCCCACGUCAa- -3'
miRNA:   3'- aaGGUUGCa--GUUc----GCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 207259 0.67 0.96197
Target:  5'- -aCCGGCGcuUCucGUGCCUGCGUCAg- -3'
miRNA:   3'- aaGGUUGC--AGuuCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 8402 0.67 0.96197
Target:  5'- cUCCGACacgCAGGCGCUgGCGUUg-- -3'
miRNA:   3'- aAGGUUGca-GUUCGCGGgUGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 205743 0.67 0.96197
Target:  5'- aUCCGGCauGUCGAGCGCCCGgaggaagaccugUGUgGUg -3'
miRNA:   3'- aAGGUUG--CAGUUCGCGGGU------------GCAgUAa -5'
14560 5' -53.8 NC_003521.1 + 23069 0.67 0.96197
Target:  5'- cUCCAcccGCGUCuguGGUGUCUGCGUCcgUg -3'
miRNA:   3'- aAGGU---UGCAGu--UCGCGGGUGCAGuaA- -5'
14560 5' -53.8 NC_003521.1 + 170885 0.67 0.95838
Target:  5'- ---gGugGUCAGGCGUCCgGCGUCGc- -3'
miRNA:   3'- aaggUugCAGUUCGCGGG-UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 142433 0.67 0.954564
Target:  5'- -aCCAGCGUCGgcaccAGCGUCUucaggcacGCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGU-----UCGCGGG--------UGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 130483 0.68 0.946239
Target:  5'- -cCCAGCuacaccgCGAGCGCggCCGCGUCAUg -3'
miRNA:   3'- aaGGUUGca-----GUUCGCG--GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 135987 0.68 0.941723
Target:  5'- -cCCAGCGugUCGGGgGgCCGCGUCAc- -3'
miRNA:   3'- aaGGUUGC--AGUUCgCgGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 142078 0.68 0.936968
Target:  5'- --aCGACGUCAAcuGCGCCUuCGUCGa- -3'
miRNA:   3'- aagGUUGCAGUU--CGCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 133557 0.68 0.936968
Target:  5'- --gCAGCGcCuaucAGCGCCUACGUCAg- -3'
miRNA:   3'- aagGUUGCaGu---UCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 194004 0.68 0.931973
Target:  5'- cUUCAGCGUCGucaccGGCGgCgGCGUCAUc -3'
miRNA:   3'- aAGGUUGCAGU-----UCGCgGgUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 197701 0.68 0.931973
Target:  5'- -cCCAGCGcCGAGCGCUCGCcgcagcgcuugGUCAg- -3'
miRNA:   3'- aaGGUUGCaGUUCGCGGGUG-----------CAGUaa -5'
14560 5' -53.8 NC_003521.1 + 175958 0.68 0.926736
Target:  5'- cUCgCGcACGUC-GGCGCCCACGuUCAg- -3'
miRNA:   3'- aAG-GU-UGCAGuUCGCGGGUGC-AGUaa -5'
14560 5' -53.8 NC_003521.1 + 154149 0.69 0.921257
Target:  5'- -gCCAGCGUCuucuuucGGCGCgaUCACGUCGUc -3'
miRNA:   3'- aaGGUUGCAGu------UCGCG--GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 237914 0.69 0.915536
Target:  5'- cUUCCAGCGUCGuuguaCCACGUCGUUu -3'
miRNA:   3'- -AAGGUUGCAGUucgcgGGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 140475 0.69 0.909576
Target:  5'- gUCCGcguggcuucgccGCGguugaggaAGGCGCCCGCGUCAc- -3'
miRNA:   3'- aAGGU------------UGCag------UUCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 166669 0.69 0.909576
Target:  5'- -gCCAGCGgCAccugggccccguGGCGCgCCACGUCGUc -3'
miRNA:   3'- aaGGUUGCaGU------------UCGCG-GGUGCAGUAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.