miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 135851 0.71 0.845604
Target:  5'- cUCCGACGUCucgcGGCGCCCccGCGgCAc- -3'
miRNA:   3'- aAGGUUGCAGu---UCGCGGG--UGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 135946 0.66 0.974179
Target:  5'- gUgCGACGccUCGGGCGCCUGCGaCAUg -3'
miRNA:   3'- aAgGUUGC--AGUUCGCGGGUGCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 135987 0.68 0.941723
Target:  5'- -cCCAGCGugUCGGGgGgCCGCGUCAc- -3'
miRNA:   3'- aaGGUUGC--AGUUCgCgGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 138492 0.75 0.625293
Target:  5'- -cCCGGCGUC-GGCGCCCACGcgCAc- -3'
miRNA:   3'- aaGGUUGCAGuUCGCGGGUGCa-GUaa -5'
14560 5' -53.8 NC_003521.1 + 140475 0.69 0.909576
Target:  5'- gUCCGcguggcuucgccGCGguugaggaAGGCGCCCGCGUCAc- -3'
miRNA:   3'- aAGGU------------UGCag------UUCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 142078 0.68 0.936968
Target:  5'- --aCGACGUCAAcuGCGCCUuCGUCGa- -3'
miRNA:   3'- aagGUUGCAGUU--CGCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 142433 0.67 0.954564
Target:  5'- -aCCAGCGUCGgcaccAGCGUCUucaggcacGCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGU-----UCGCGGG--------UGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 142768 0.67 0.968494
Target:  5'- -aCCAGCGUCc-GCGgCgGCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGuuCGCgGgUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 142999 0.67 0.96534
Target:  5'- -aCCGGCgGUCGcGcCGUCCGCGUCAa- -3'
miRNA:   3'- aaGGUUG-CAGUuC-GCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 147647 0.66 0.974179
Target:  5'- cUCCGAcCGUCGAGC-CCCgguagagggACGUCGa- -3'
miRNA:   3'- aAGGUU-GCAGUUCGcGGG---------UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 149275 0.66 0.97908
Target:  5'- gUUCC-GCGUC-GGCGCCCACa----- -3'
miRNA:   3'- -AAGGuUGCAGuUCGCGGGUGcaguaa -5'
14560 5' -53.8 NC_003521.1 + 149916 0.66 0.976478
Target:  5'- cUCCGACGagGAcgauaacGCGCCCuccuCGUCGUc -3'
miRNA:   3'- aAGGUUGCagUU-------CGCGGGu---GCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 152817 0.76 0.563909
Target:  5'- gUCCAcgcACGUC-AGCGCCCugGUCu-- -3'
miRNA:   3'- aAGGU---UGCAGuUCGCGGGugCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 154149 0.69 0.921257
Target:  5'- -gCCAGCGUCuucuuucGGCGCgaUCACGUCGUc -3'
miRNA:   3'- aaGGUUGCAGu------UCGCG--GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 156191 0.67 0.968494
Target:  5'- -gCCGguggcGCGUCAGGaaGCCUACGUCGa- -3'
miRNA:   3'- aaGGU-----UGCAGUUCg-CGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 166595 0.66 0.981254
Target:  5'- gUCCAcCGUCAcGGCGCCgACGg---- -3'
miRNA:   3'- aAGGUuGCAGU-UCGCGGgUGCaguaa -5'
14560 5' -53.8 NC_003521.1 + 166669 0.69 0.909576
Target:  5'- -gCCAGCGgCAccugggccccguGGCGCgCCACGUCGUc -3'
miRNA:   3'- aaGGUUGCaGU------------UCGCG-GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 170116 0.72 0.793922
Target:  5'- aUCCGGCG-CAGGCGCCgACG-CAg- -3'
miRNA:   3'- aAGGUUGCaGUUCGCGGgUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 170778 0.71 0.820541
Target:  5'- cUCgAACGUCuuGGCGCCCcACGUCc-- -3'
miRNA:   3'- aAGgUUGCAGu-UCGCGGG-UGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 170885 0.67 0.95838
Target:  5'- ---gGugGUCAGGCGUCCgGCGUCGc- -3'
miRNA:   3'- aaggUugCAGUUCGCGGG-UGCAGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.