miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 8402 0.67 0.96197
Target:  5'- cUCCGACacgCAGGCGCUgGCGUUg-- -3'
miRNA:   3'- aAGGUUGca-GUUCGCGGgUGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 22345 0.7 0.861344
Target:  5'- -cCCGACGUCcggggccacuGCGCCCACGgCGUg -3'
miRNA:   3'- aaGGUUGCAGuu--------CGCGGGUGCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 23069 0.67 0.96197
Target:  5'- cUCCAcccGCGUCuguGGUGUCUGCGUCcgUg -3'
miRNA:   3'- aAGGU---UGCAGu--UCGCGGGUGCAGuaA- -5'
14560 5' -53.8 NC_003521.1 + 24194 0.72 0.775423
Target:  5'- -cCCGGCGUCGGcGCGCCCGCcuaccGUCGa- -3'
miRNA:   3'- aaGGUUGCAGUU-CGCGGGUG-----CAGUaa -5'
14560 5' -53.8 NC_003521.1 + 32151 0.69 0.903376
Target:  5'- -aCCaAGCGgcggaAGGCGCCCGCGUUGUUc -3'
miRNA:   3'- aaGG-UUGCag---UUCGCGGGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 32249 0.69 0.903376
Target:  5'- cUCgAGCGUCAGGC-CCCggAUGUCAUa -3'
miRNA:   3'- aAGgUUGCAGUUCGcGGG--UGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 34367 0.67 0.96197
Target:  5'- -aCCGAUGgggCAAuccccCGCCCACGUCAa- -3'
miRNA:   3'- aaGGUUGCa--GUUc----GCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 34996 0.69 0.903376
Target:  5'- cUCCGGgGccagCGAGCGCUUGCGUCGUg -3'
miRNA:   3'- aAGGUUgCa---GUUCGCGGGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 49301 0.73 0.727071
Target:  5'- -gCCAgcGCGUCGAGCGCCC-CGgucgCAUUc -3'
miRNA:   3'- aaGGU--UGCAGUUCGCGGGuGCa---GUAA- -5'
14560 5' -53.8 NC_003521.1 + 54872 0.66 0.971438
Target:  5'- gUCCAaucuGCGUCAAGaacaCCaCACGUCAUc -3'
miRNA:   3'- aAGGU----UGCAGUUCgc--GG-GUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 63546 0.73 0.746727
Target:  5'- -cCCAGCGUCAcggAGcCGCCCuCGUCAc- -3'
miRNA:   3'- aaGGUUGCAGU---UC-GCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 73773 0.66 0.97908
Target:  5'- -aCCGGCGUCAugAGCGC-CACGcCGc- -3'
miRNA:   3'- aaGGUUGCAGU--UCGCGgGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 85827 0.66 0.974179
Target:  5'- cUUCCAgggcuucggucuGCGUCGGGgaGCCCACG-CAg- -3'
miRNA:   3'- -AAGGU------------UGCAGUUCg-CGGGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 89849 0.66 0.981254
Target:  5'- -gCCGAUGUCGgccgccAGCGCC-GCGUCGc- -3'
miRNA:   3'- aaGGUUGCAGU------UCGCGGgUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 109373 0.66 0.981254
Target:  5'- gUCCAGCGgCAGGCaGgCCAgGUCGc- -3'
miRNA:   3'- aAGGUUGCaGUUCG-CgGGUgCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 125271 0.67 0.965665
Target:  5'- gUCCGcgcagcacggcgcucCGUCAGGCGagCCGCGUCGUUc -3'
miRNA:   3'- aAGGUu--------------GCAGUUCGCg-GGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 128544 0.66 0.976724
Target:  5'- -cCCGACGUCAGGUgGCCCuuGUa--- -3'
miRNA:   3'- aaGGUUGCAGUUCG-CGGGugCAguaa -5'
14560 5' -53.8 NC_003521.1 + 130483 0.68 0.946239
Target:  5'- -cCCAGCuacaccgCGAGCGCggCCGCGUCAUg -3'
miRNA:   3'- aaGGUUGca-----GUUCGCG--GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 133557 0.68 0.936968
Target:  5'- --gCAGCGcCuaucAGCGCCUACGUCAg- -3'
miRNA:   3'- aagGUUGCaGu---UCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 135491 0.66 0.976724
Target:  5'- cUCUAACGUCAcGuCGCCCACa----- -3'
miRNA:   3'- aAGGUUGCAGUuC-GCGGGUGcaguaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.