miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 149916 0.66 0.976478
Target:  5'- cUCCGACGagGAcgauaacGCGCCCuccuCGUCGUc -3'
miRNA:   3'- aAGGUUGCagUU-------CGCGGGu---GCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 130483 0.68 0.946239
Target:  5'- -cCCAGCuacaccgCGAGCGCggCCGCGUCAUg -3'
miRNA:   3'- aaGGUUGca-----GUUCGCG--GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 142433 0.67 0.954564
Target:  5'- -aCCAGCGUCGgcaccAGCGUCUucaggcacGCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGU-----UCGCGGG--------UGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 224678 0.67 0.96534
Target:  5'- cUUCAGCGUCuuggcguGGCGCCCGgG-CGUg -3'
miRNA:   3'- aAGGUUGCAGu------UCGCGGGUgCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 142999 0.67 0.96534
Target:  5'- -aCCGGCgGUCGcGcCGUCCGCGUCAa- -3'
miRNA:   3'- aaGGUUG-CAGUuC-GCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 125271 0.67 0.965665
Target:  5'- gUCCGcgcagcacggcgcucCGUCAGGCGagCCGCGUCGUUc -3'
miRNA:   3'- aAGGUu--------------GCAGUUCGCg-GGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 142768 0.67 0.968494
Target:  5'- -aCCAGCGUCc-GCGgCgGCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGuuCGCgGgUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 224738 0.66 0.974179
Target:  5'- -gCCGACG-CAGGCGgCCagcGCGUCGg- -3'
miRNA:   3'- aaGGUUGCaGUUCGCgGG---UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 135946 0.66 0.974179
Target:  5'- gUgCGACGccUCGGGCGCCUGCGaCAUg -3'
miRNA:   3'- aAgGUUGC--AGUUCGCGGGUGCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 142078 0.68 0.936968
Target:  5'- --aCGACGUCAAcuGCGCCUuCGUCGa- -3'
miRNA:   3'- aagGUUGCAGUU--CGCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 133557 0.68 0.936968
Target:  5'- --gCAGCGcCuaucAGCGCCUACGUCAg- -3'
miRNA:   3'- aagGUUGCaGu---UCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 237914 0.69 0.915536
Target:  5'- cUUCCAGCGUCGuuguaCCACGUCGUUu -3'
miRNA:   3'- -AAGGUUGCAGUucgcgGGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 63546 0.73 0.746727
Target:  5'- -cCCAGCGUCAcggAGcCGCCCuCGUCAc- -3'
miRNA:   3'- aaGGUUGCAGU---UC-GCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 170778 0.71 0.820541
Target:  5'- cUCgAACGUCuuGGCGCCCcACGUCc-- -3'
miRNA:   3'- aAGgUUGCAGu-UCGCGGG-UGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 190380 0.7 0.883372
Target:  5'- cUCCGACGUCGAuacaGCCCACGaCGa- -3'
miRNA:   3'- aAGGUUGCAGUUcg--CGGGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 194549 0.7 0.890271
Target:  5'- gUCUGccGCGUCGGGCGCCU-CGUCGa- -3'
miRNA:   3'- aAGGU--UGCAGUUCGCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 32151 0.69 0.903376
Target:  5'- -aCCaAGCGgcggaAGGCGCCCGCGUUGUUc -3'
miRNA:   3'- aaGG-UUGCag---UUCGCGGGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 32249 0.69 0.903376
Target:  5'- cUCgAGCGUCAGGC-CCCggAUGUCAUa -3'
miRNA:   3'- aAGgUUGCAGUUCGcGGG--UGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 34996 0.69 0.903376
Target:  5'- cUCCGGgGccagCGAGCGCUUGCGUCGUg -3'
miRNA:   3'- aAGGUUgCa---GUUCGCGGGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 140475 0.69 0.909576
Target:  5'- gUCCGcguggcuucgccGCGguugaggaAGGCGCCCGCGUCAc- -3'
miRNA:   3'- aAGGU------------UGCag------UUCGCGGGUGCAGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.