miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 191556 1.02 0.015491
Target:  5'- uUUCCAACGUCAAGCGCCCACGUCAUUu -3'
miRNA:   3'- -AAGGUUGCAGUUCGCGGGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 152817 0.76 0.563909
Target:  5'- gUCCAcgcACGUC-AGCGCCCugGUCu-- -3'
miRNA:   3'- aAGGU---UGCAGuUCGCGGGugCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 138492 0.75 0.625293
Target:  5'- -cCCGGCGUC-GGCGCCCACGcgCAc- -3'
miRNA:   3'- aaGGUUGCAGuUCGCGGGUGCa-GUaa -5'
14560 5' -53.8 NC_003521.1 + 49301 0.73 0.727071
Target:  5'- -gCCAgcGCGUCGAGCGCCC-CGgucgCAUUc -3'
miRNA:   3'- aaGGU--UGCAGUUCGCGGGuGCa---GUAA- -5'
14560 5' -53.8 NC_003521.1 + 63546 0.73 0.746727
Target:  5'- -cCCAGCGUCAcggAGcCGCCCuCGUCAc- -3'
miRNA:   3'- aaGGUUGCAGU---UC-GCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 24194 0.72 0.775423
Target:  5'- -cCCGGCGUCGGcGCGCCCGCcuaccGUCGa- -3'
miRNA:   3'- aaGGUUGCAGUU-CGCGGGUG-----CAGUaa -5'
14560 5' -53.8 NC_003521.1 + 170116 0.72 0.793922
Target:  5'- aUCCGGCG-CAGGCGCCgACG-CAg- -3'
miRNA:   3'- aAGGUUGCaGUUCGCGGgUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 194784 0.72 0.802058
Target:  5'- -gCCAACGUCAuGGCGCCCcucacuccuccccACGUCu-- -3'
miRNA:   3'- aaGGUUGCAGU-UCGCGGG-------------UGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 186269 0.72 0.802954
Target:  5'- -aCCcGCGUCAAGCGCa-ACGUCAa- -3'
miRNA:   3'- aaGGuUGCAGUUCGCGggUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 170778 0.71 0.820541
Target:  5'- cUCgAACGUCuuGGCGCCCcACGUCc-- -3'
miRNA:   3'- aAGgUUGCAGu-UCGCGGG-UGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 135851 0.71 0.845604
Target:  5'- cUCCGACGUCucgcGGCGCCCccGCGgCAc- -3'
miRNA:   3'- aAGGUUGCAGu---UCGCGGG--UGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 22345 0.7 0.861344
Target:  5'- -cCCGACGUCcggggccacuGCGCCCACGgCGUg -3'
miRNA:   3'- aaGGUUGCAGuu--------CGCGGGUGCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 190380 0.7 0.883372
Target:  5'- cUCCGACGUCGAuacaGCCCACGaCGa- -3'
miRNA:   3'- aAGGUUGCAGUUcg--CGGGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 194549 0.7 0.890271
Target:  5'- gUCUGccGCGUCGGGCGCCU-CGUCGa- -3'
miRNA:   3'- aAGGU--UGCAGUUCGCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 32151 0.69 0.903376
Target:  5'- -aCCaAGCGgcggaAGGCGCCCGCGUUGUUc -3'
miRNA:   3'- aaGG-UUGCag---UUCGCGGGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 32249 0.69 0.903376
Target:  5'- cUCgAGCGUCAGGC-CCCggAUGUCAUa -3'
miRNA:   3'- aAGgUUGCAGUUCGcGGG--UGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 34996 0.69 0.903376
Target:  5'- cUCCGGgGccagCGAGCGCUUGCGUCGUg -3'
miRNA:   3'- aAGGUUgCa---GUUCGCGGGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 166669 0.69 0.909576
Target:  5'- -gCCAGCGgCAccugggccccguGGCGCgCCACGUCGUc -3'
miRNA:   3'- aaGGUUGCaGU------------UCGCG-GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 140475 0.69 0.909576
Target:  5'- gUCCGcguggcuucgccGCGguugaggaAGGCGCCCGCGUCAc- -3'
miRNA:   3'- aAGGU------------UGCag------UUCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 237914 0.69 0.915536
Target:  5'- cUUCCAGCGUCGuuguaCCACGUCGUUu -3'
miRNA:   3'- -AAGGUUGCAGUucgcgGGUGCAGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.