miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 152817 0.76 0.563909
Target:  5'- gUCCAcgcACGUC-AGCGCCCugGUCu-- -3'
miRNA:   3'- aAGGU---UGCAGuUCGCGGGugCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 34367 0.67 0.96197
Target:  5'- -aCCGAUGgggCAAuccccCGCCCACGUCAa- -3'
miRNA:   3'- aaGGUUGCa--GUUc----GCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 205743 0.67 0.96197
Target:  5'- aUCCGGCauGUCGAGCGCCCGgaggaagaccugUGUgGUg -3'
miRNA:   3'- aAGGUUG--CAGUUCGCGGGU------------GCAgUAa -5'
14560 5' -53.8 NC_003521.1 + 89849 0.66 0.981254
Target:  5'- -gCCGAUGUCGgccgccAGCGCC-GCGUCGc- -3'
miRNA:   3'- aaGGUUGCAGU------UCGCGGgUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 170116 0.72 0.793922
Target:  5'- aUCCGGCG-CAGGCGCCgACG-CAg- -3'
miRNA:   3'- aAGGUUGCaGUUCGCGGgUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 194784 0.72 0.802058
Target:  5'- -gCCAACGUCAuGGCGCCCcucacuccuccccACGUCu-- -3'
miRNA:   3'- aaGGUUGCAGU-UCGCGGG-------------UGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 135851 0.71 0.845604
Target:  5'- cUCCGACGUCucgcGGCGCCCccGCGgCAc- -3'
miRNA:   3'- aAGGUUGCAGu---UCGCGGG--UGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 22345 0.7 0.861344
Target:  5'- -cCCGACGUCcggggccacuGCGCCCACGgCGUg -3'
miRNA:   3'- aaGGUUGCAGuu--------CGCGGGUGCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 175958 0.68 0.926736
Target:  5'- cUCgCGcACGUC-GGCGCCCACGuUCAg- -3'
miRNA:   3'- aAG-GU-UGCAGuUCGCGGGUGC-AGUaa -5'
14560 5' -53.8 NC_003521.1 + 8402 0.67 0.96197
Target:  5'- cUCCGACacgCAGGCGCUgGCGUUg-- -3'
miRNA:   3'- aAGGUUGca-GUUCGCGGgUGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 197701 0.68 0.931973
Target:  5'- -cCCAGCGcCGAGCGCUCGCcgcagcgcuugGUCAg- -3'
miRNA:   3'- aaGGUUGCaGUUCGCGGGUG-----------CAGUaa -5'
14560 5' -53.8 NC_003521.1 + 154149 0.69 0.921257
Target:  5'- -gCCAGCGUCuucuuucGGCGCgaUCACGUCGUc -3'
miRNA:   3'- aaGGUUGCAGu------UCGCG--GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 138492 0.75 0.625293
Target:  5'- -cCCGGCGUC-GGCGCCCACGcgCAc- -3'
miRNA:   3'- aaGGUUGCAGuUCGCGGGUGCa-GUaa -5'
14560 5' -53.8 NC_003521.1 + 135987 0.68 0.941723
Target:  5'- -cCCAGCGugUCGGGgGgCCGCGUCAc- -3'
miRNA:   3'- aaGGUUGC--AGUUCgCgGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 49301 0.73 0.727071
Target:  5'- -gCCAgcGCGUCGAGCGCCC-CGgucgCAUUc -3'
miRNA:   3'- aaGGU--UGCAGUUCGCGGGuGCa---GUAA- -5'
14560 5' -53.8 NC_003521.1 + 166669 0.69 0.909576
Target:  5'- -gCCAGCGgCAccugggccccguGGCGCgCCACGUCGUc -3'
miRNA:   3'- aaGGUUGCaGU------------UCGCG-GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 170885 0.67 0.95838
Target:  5'- ---gGugGUCAGGCGUCCgGCGUCGc- -3'
miRNA:   3'- aaggUugCAGUUCGCGGG-UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 23069 0.67 0.96197
Target:  5'- cUCCAcccGCGUCuguGGUGUCUGCGUCcgUg -3'
miRNA:   3'- aAGGU---UGCAGu--UCGCGGGUGCAGuaA- -5'
14560 5' -53.8 NC_003521.1 + 24194 0.72 0.775423
Target:  5'- -cCCGGCGUCGGcGCGCCCGCcuaccGUCGa- -3'
miRNA:   3'- aaGGUUGCAGUU-CGCGGGUG-----CAGUaa -5'
14560 5' -53.8 NC_003521.1 + 186269 0.72 0.802954
Target:  5'- -aCCcGCGUCAAGCGCa-ACGUCAa- -3'
miRNA:   3'- aaGGuUGCAGUUCGCGggUGCAGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.