miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 237914 0.69 0.915536
Target:  5'- cUUCCAGCGUCGuuguaCCACGUCGUUu -3'
miRNA:   3'- -AAGGUUGCAGUucgcgGGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 224738 0.66 0.974179
Target:  5'- -gCCGACG-CAGGCGgCCagcGCGUCGg- -3'
miRNA:   3'- aaGGUUGCaGUUCGCgGG---UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 224678 0.67 0.96534
Target:  5'- cUUCAGCGUCuuggcguGGCGCCCGgG-CGUg -3'
miRNA:   3'- aAGGUUGCAGu------UCGCGGGUgCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 207259 0.67 0.96197
Target:  5'- -aCCGGCGcuUCucGUGCCUGCGUCAg- -3'
miRNA:   3'- aaGGUUGC--AGuuCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 205743 0.67 0.96197
Target:  5'- aUCCGGCauGUCGAGCGCCCGgaggaagaccugUGUgGUg -3'
miRNA:   3'- aAGGUUG--CAGUUCGCGGGU------------GCAgUAa -5'
14560 5' -53.8 NC_003521.1 + 197701 0.68 0.931973
Target:  5'- -cCCAGCGcCGAGCGCUCGCcgcagcgcuugGUCAg- -3'
miRNA:   3'- aaGGUUGCaGUUCGCGGGUG-----------CAGUaa -5'
14560 5' -53.8 NC_003521.1 + 194784 0.72 0.802058
Target:  5'- -gCCAACGUCAuGGCGCCCcucacuccuccccACGUCu-- -3'
miRNA:   3'- aaGGUUGCAGU-UCGCGGG-------------UGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 194549 0.7 0.890271
Target:  5'- gUCUGccGCGUCGGGCGCCU-CGUCGa- -3'
miRNA:   3'- aAGGU--UGCAGUUCGCGGGuGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 194004 0.68 0.931973
Target:  5'- cUUCAGCGUCGucaccGGCGgCgGCGUCAUc -3'
miRNA:   3'- aAGGUUGCAGU-----UCGCgGgUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 191999 0.66 0.97908
Target:  5'- -gUCAGCGUCGAGCaGCCguuCAuCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGUUCG-CGG---GU-GCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 191556 1.02 0.015491
Target:  5'- uUUCCAACGUCAAGCGCCCACGUCAUUu -3'
miRNA:   3'- -AAGGUUGCAGUUCGCGGGUGCAGUAA- -5'
14560 5' -53.8 NC_003521.1 + 190380 0.7 0.883372
Target:  5'- cUCCGACGUCGAuacaGCCCACGaCGa- -3'
miRNA:   3'- aAGGUUGCAGUUcg--CGGGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 186845 0.66 0.976724
Target:  5'- --gCAACGUCGAGCGCgaucacgaCCACGgCAa- -3'
miRNA:   3'- aagGUUGCAGUUCGCG--------GGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 186269 0.72 0.802954
Target:  5'- -aCCcGCGUCAAGCGCa-ACGUCAa- -3'
miRNA:   3'- aaGGuUGCAGUUCGCGggUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 184113 0.66 0.971438
Target:  5'- -cUCGACGUCGAcGCGaCCaGCGUCAUc -3'
miRNA:   3'- aaGGUUGCAGUU-CGC-GGgUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 175958 0.68 0.926736
Target:  5'- cUCgCGcACGUC-GGCGCCCACGuUCAg- -3'
miRNA:   3'- aAG-GU-UGCAGuUCGCGGGUGC-AGUaa -5'
14560 5' -53.8 NC_003521.1 + 171632 0.66 0.97908
Target:  5'- -gCCGACGUCGgguaugucuAGCGCgCCGCGgcgggCGUc -3'
miRNA:   3'- aaGGUUGCAGU---------UCGCG-GGUGCa----GUAa -5'
14560 5' -53.8 NC_003521.1 + 170885 0.67 0.95838
Target:  5'- ---gGugGUCAGGCGUCCgGCGUCGc- -3'
miRNA:   3'- aaggUugCAGUUCGCGGG-UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 170778 0.71 0.820541
Target:  5'- cUCgAACGUCuuGGCGCCCcACGUCc-- -3'
miRNA:   3'- aAGgUUGCAGu-UCGCGGG-UGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 170116 0.72 0.793922
Target:  5'- aUCCGGCG-CAGGCGCCgACG-CAg- -3'
miRNA:   3'- aAGGUUGCaGUUCGCGGgUGCaGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.