miRNA display CGI


Results 41 - 60 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 5' -52.6 NC_003521.1 + 151588 0.67 0.991863
Target:  5'- aGCaCGcCCGAUGggGaaaucuuGGGAgggcccGGCAGGu -3'
miRNA:   3'- -CG-GC-GGCUACuuUgu-----CCCUa-----UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 96793 0.67 0.991863
Target:  5'- cGCCGCaGAccGGAACGGGGA-AGCGc- -3'
miRNA:   3'- -CGGCGgCUa-CUUUGUCCCUaUCGUcc -5'
14585 5' -52.6 NC_003521.1 + 49764 0.67 0.991863
Target:  5'- gGUCGCCGcgGGAACAGaacugagcgucGGccAGCAGa -3'
miRNA:   3'- -CGGCGGCuaCUUUGUC-----------CCuaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 6839 0.67 0.991197
Target:  5'- gGgCGCCGAggagguuguaguggGAGGCGuGGGUAGCGGa -3'
miRNA:   3'- -CgGCGGCUa-------------CUUUGUcCCUAUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 27256 0.67 0.99073
Target:  5'- gGCuCGCCGAUGAuGCGGcccacgaaGGccaGGCGGGu -3'
miRNA:   3'- -CG-GCGGCUACUuUGUC--------CCua-UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 168432 0.67 0.99073
Target:  5'- cGCCGCUGGUGAucGACGaGGAcgccgAGUAcGGg -3'
miRNA:   3'- -CGGCGGCUACU--UUGUcCCUa----UCGU-CC- -5'
14585 5' -52.6 NC_003521.1 + 123050 0.67 0.99073
Target:  5'- cGCCGCCaccAUGcuGCuGGGAcGGCGGcGg -3'
miRNA:   3'- -CGGCGGc--UACuuUGuCCCUaUCGUC-C- -5'
14585 5' -52.6 NC_003521.1 + 98965 0.67 0.99073
Target:  5'- gGUgGCUGGUGAGGCGgugccGGGAgccGUAGGc -3'
miRNA:   3'- -CGgCGGCUACUUUGU-----CCCUau-CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 84806 0.67 0.99073
Target:  5'- cGCUGUCGGUGAAGCGcaacuccacguGuGAUGGCGGu -3'
miRNA:   3'- -CGGCGGCUACUUUGU-----------CcCUAUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 148649 0.67 0.99073
Target:  5'- gGCC-CCGAgcucGGCGGGGAUGGCc-- -3'
miRNA:   3'- -CGGcGGCUacu-UUGUCCCUAUCGucc -5'
14585 5' -52.6 NC_003521.1 + 210349 0.67 0.99073
Target:  5'- uCCGCCGucAUGAcuGACGuGGGAUugAGCaAGGc -3'
miRNA:   3'- cGGCGGC--UACU--UUGU-CCCUA--UCG-UCC- -5'
14585 5' -52.6 NC_003521.1 + 157291 0.67 0.99073
Target:  5'- gGCgGCCGcgu--ACGGGGGgaGGCGGGa -3'
miRNA:   3'- -CGgCGGCuacuuUGUCCCUa-UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 140126 0.67 0.99073
Target:  5'- cGCCGCCacguuGGUGAAgGCcGuGGAgauGCAGGa -3'
miRNA:   3'- -CGGCGG-----CUACUU-UGuC-CCUau-CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 40343 0.67 0.99061
Target:  5'- gGUC-CCGggGGGugGGGGGguguuuuUGGCGGGg -3'
miRNA:   3'- -CGGcGGCuaCUUugUCCCU-------AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 240570 0.67 0.99061
Target:  5'- gGUC-CCGggGGGugGGGGGguguuuuUGGCGGGg -3'
miRNA:   3'- -CGGcGGCuaCUUugUCCCU-------AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 21 0.67 0.99061
Target:  5'- gGUC-CCGggGGGugGGGGGguguuuuUGGCGGGg -3'
miRNA:   3'- -CGGcGGCuaCUUugUCCCU-------AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 53372 0.67 0.989476
Target:  5'- gGCCGacagaCCGAgcaGGAGCAGgccgcGGcgAGCAGGg -3'
miRNA:   3'- -CGGC-----GGCUa--CUUUGUC-----CCuaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 197247 0.67 0.989476
Target:  5'- cGCCGcCCGAggagcggugcuUGAcgcggcgccggcGGCGGGGA--GCGGGa -3'
miRNA:   3'- -CGGC-GGCU-----------ACU------------UUGUCCCUauCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 44295 0.67 0.989476
Target:  5'- gGgCGCCGAcgacgUGAcguACGGGGugcugaAGCAGGu -3'
miRNA:   3'- -CgGCGGCU-----ACUu--UGUCCCua----UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 103666 0.67 0.989476
Target:  5'- gGCCGCUGcgGccGCGGccAUGGCGGGc -3'
miRNA:   3'- -CGGCGGCuaCuuUGUCccUAUCGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.