miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 5' -52.6 NC_003521.1 + 33106 0.69 0.958672
Target:  5'- aGCCaGCCGAUGAc---GGcGUAGCGGGc -3'
miRNA:   3'- -CGG-CGGCUACUuuguCCcUAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 34129 0.69 0.97415
Target:  5'- aGUCGUCGAUG-AGCAGGGc---CAGGc -3'
miRNA:   3'- -CGGCGGCUACuUUGUCCCuaucGUCC- -5'
14585 5' -52.6 NC_003521.1 + 35493 0.67 0.988093
Target:  5'- cGCCGCCGAgGAGGCgccguAGGGugucgAGguGu -3'
miRNA:   3'- -CGGCGGCUaCUUUG-----UCCCua---UCguCc -5'
14585 5' -52.6 NC_003521.1 + 36062 0.72 0.905119
Target:  5'- cGCCGCCGAcacAACAGGGc-GGCGGcGg -3'
miRNA:   3'- -CGGCGGCUacuUUGUCCCuaUCGUC-C- -5'
14585 5' -52.6 NC_003521.1 + 38004 0.66 0.995278
Target:  5'- aGUCGCCGGcgcUGAGGCGGGuuuguucGAcGGCGGu -3'
miRNA:   3'- -CGGCGGCU---ACUUUGUCC-------CUaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 38252 0.68 0.984736
Target:  5'- -aCGCCGGUGAucuCAGcGGAgacgacgUAGCGGa -3'
miRNA:   3'- cgGCGGCUACUuu-GUC-CCU-------AUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 38449 0.66 0.993799
Target:  5'- uGCUGCUGcUGGAGCAGGuc-GGCGGc -3'
miRNA:   3'- -CGGCGGCuACUUUGUCCcuaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 38744 0.71 0.911144
Target:  5'- uGCUGCCGAUGGAGgauuuauuCGGGGAaGGCu-- -3'
miRNA:   3'- -CGGCGGCUACUUU--------GUCCCUaUCGucc -5'
14585 5' -52.6 NC_003521.1 + 40343 0.67 0.99061
Target:  5'- gGUC-CCGggGGGugGGGGGguguuuuUGGCGGGg -3'
miRNA:   3'- -CGGcGGCuaCUUugUCCCU-------AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 40603 0.66 0.995993
Target:  5'- cGCUGCgCGGauAGACuAGGG-UGGUAGGg -3'
miRNA:   3'- -CGGCG-GCUacUUUG-UCCCuAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 40875 0.73 0.869447
Target:  5'- aGCCGCgGAgggaagggaccGggGCGGGGGUcaguuuaauagcgaGGCGGGg -3'
miRNA:   3'- -CGGCGgCUa----------CuuUGUCCCUA--------------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 43569 0.7 0.954173
Target:  5'- gGCCGCUGAcugggGGGACGGGGGcaaaacggagggGGCgAGGa -3'
miRNA:   3'- -CGGCGGCUa----CUUUGUCCCUa-----------UCG-UCC- -5'
14585 5' -52.6 NC_003521.1 + 43648 0.68 0.982518
Target:  5'- gGCCGCCGccGGAgaGCAGagaggaggagaggaGGAgcagcAGCAGGa -3'
miRNA:   3'- -CGGCGGCuaCUU--UGUC--------------CCUa----UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 44295 0.67 0.989476
Target:  5'- gGgCGCCGAcgacgUGAcguACGGGGugcugaAGCAGGu -3'
miRNA:   3'- -CgGCGGCU-----ACUu--UGUCCCua----UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 44509 0.66 0.995347
Target:  5'- aGCCGCCGucgu--CAGGcGgcGCAGGg -3'
miRNA:   3'- -CGGCGGCuacuuuGUCCcUauCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 48699 0.69 0.971457
Target:  5'- cGCCgacggaGCCGAcGAGGCcGGGAgAGguGGa -3'
miRNA:   3'- -CGG------CGGCUaCUUUGuCCCUaUCguCC- -5'
14585 5' -52.6 NC_003521.1 + 49764 0.67 0.991863
Target:  5'- gGUCGCCGcgGGAACAGaacugagcgucGGccAGCAGa -3'
miRNA:   3'- -CGGCGGCuaCUUUGUC-----------CCuaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 49928 0.67 0.986574
Target:  5'- aCCGCgGAUcgcGCAGGGA-AGCAGa -3'
miRNA:   3'- cGGCGgCUAcuuUGUCCCUaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 52189 0.7 0.946392
Target:  5'- uGCCGCCGGggcggcGAGcucaucagacaguACGGGGGccGGUAGGg -3'
miRNA:   3'- -CGGCGGCUa-----CUU-------------UGUCCCUa-UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 53191 0.73 0.874508
Target:  5'- cGCCGUCGGUGAAcccuccggugagcucGcCGGGGAguccGCGGGc -3'
miRNA:   3'- -CGGCGGCUACUU---------------U-GUCCCUau--CGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.