miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 5' -52.6 NC_003521.1 + 21 0.67 0.99061
Target:  5'- gGUC-CCGggGGGugGGGGGguguuuuUGGCGGGg -3'
miRNA:   3'- -CGGcGGCuaCUUugUCCCU-------AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 281 0.66 0.995994
Target:  5'- cGCUGCgCGGauAGACuAGGG-UGGUAGGg -3'
miRNA:   3'- -CGGCG-GCUacUUUG-UCCCuAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 1454 0.69 0.97415
Target:  5'- cGCCGCCGGUGGcAGCAcacGGGcaucccgcuGCAGa -3'
miRNA:   3'- -CGGCGGCUACU-UUGU---CCCuau------CGUCc -5'
14585 5' -52.6 NC_003521.1 + 1682 0.74 0.807518
Target:  5'- uGCCGCCacGAcacaGAGGCGGGGAcgccGCAGGa -3'
miRNA:   3'- -CGGCGG--CUa---CUUUGUCCCUau--CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 6839 0.67 0.991197
Target:  5'- gGgCGCCGAggagguuguaguggGAGGCGuGGGUAGCGGa -3'
miRNA:   3'- -CgGCGGCUa-------------CUUUGUcCCUAUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 10496 0.66 0.994618
Target:  5'- -gCGCCG-----GCGGGGAUGGCGuGGc -3'
miRNA:   3'- cgGCGGCuacuuUGUCCCUAUCGU-CC- -5'
14585 5' -52.6 NC_003521.1 + 13474 0.72 0.905119
Target:  5'- cGCCGUCGAcggucUGGgcGACGGGGAacGUGGGg -3'
miRNA:   3'- -CGGCGGCU-----ACU--UUGUCCCUauCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 13880 0.66 0.995347
Target:  5'- cGCCGCC-AUGGAuuucgcCGGGGGgcccGGCGcGGa -3'
miRNA:   3'- -CGGCGGcUACUUu-----GUCCCUa---UCGU-CC- -5'
14585 5' -52.6 NC_003521.1 + 16977 0.69 0.967664
Target:  5'- aGCCGCagcagcagccGCAGGGAcAGCAGGc -3'
miRNA:   3'- -CGGCGgcuacuu---UGUCCCUaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 18093 0.68 0.976652
Target:  5'- aCgGCCGcgGGGACGGaGGAggUAGCGGu -3'
miRNA:   3'- cGgCGGCuaCUUUGUC-CCU--AUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 18733 0.74 0.798728
Target:  5'- cGCUGCCGgcGcuGCAGGGcgGGCuguGGg -3'
miRNA:   3'- -CGGCGGCuaCuuUGUCCCuaUCGu--CC- -5'
14585 5' -52.6 NC_003521.1 + 19085 0.67 0.987199
Target:  5'- gGCCGUgagGAggaggGGGACGGGGAgggagacgacgcgggUGGCGGGc -3'
miRNA:   3'- -CGGCGg--CUa----CUUUGUCCCU---------------AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 26034 0.68 0.98491
Target:  5'- -aCGgCGGUGAagagGACGGcGGcgAGCGGGa -3'
miRNA:   3'- cgGCgGCUACU----UUGUC-CCuaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 27256 0.67 0.99073
Target:  5'- gGCuCGCCGAUGAuGCGGcccacgaaGGccaGGCGGGu -3'
miRNA:   3'- -CG-GCGGCUACUuUGUC--------CCua-UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 28033 0.68 0.985083
Target:  5'- cGCCGCgGGgagcgggacccaacaGAGGCGGGGGagAGaCAGGa -3'
miRNA:   3'- -CGGCGgCUa--------------CUUUGUCCCUa-UC-GUCC- -5'
14585 5' -52.6 NC_003521.1 + 29749 0.66 0.992884
Target:  5'- cCCGCCGGgcaacgGcGACAGaGcGAgAGCAGGa -3'
miRNA:   3'- cGGCGGCUa-----CuUUGUC-C-CUaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 31017 0.69 0.973889
Target:  5'- cGCCGgCGAgGAcgcguucguggugGugGGGGGUGGgAGGa -3'
miRNA:   3'- -CGGCgGCUaCU-------------UugUCCCUAUCgUCC- -5'
14585 5' -52.6 NC_003521.1 + 31434 0.66 0.993886
Target:  5'- cGCCGCCGAaGAcgacuACGGGGAggacgacuaugaGGGg -3'
miRNA:   3'- -CGGCGGCUaCUu----UGUCCCUaucg--------UCC- -5'
14585 5' -52.6 NC_003521.1 + 32353 0.68 0.98091
Target:  5'- uGCCggaGCCGgcGGGACGGGGcuuuugguggcgcGUGGcCAGGu -3'
miRNA:   3'- -CGG---CGGCuaCUUUGUCCC-------------UAUC-GUCC- -5'
14585 5' -52.6 NC_003521.1 + 32682 0.66 0.995347
Target:  5'- aGCUGCCGGaucGAGgcgccACGGGGcuaauAUAGCuAGGg -3'
miRNA:   3'- -CGGCGGCUa--CUU-----UGUCCC-----UAUCG-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.