miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 5' -52.6 NC_003521.1 + 207308 1.12 0.006384
Target:  5'- uGCCGCCGAUGAAACAGGGAUAGCAGGu -3'
miRNA:   3'- -CGGCGGCUACUUUGUCCCUAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 122746 0.85 0.289831
Target:  5'- cGCCGCCGAUGGcugacaccgggcACGGGGAUGGCGGc -3'
miRNA:   3'- -CGGCGGCUACUu-----------UGUCCCUAUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 162280 0.77 0.675244
Target:  5'- cGgCGCCGAcacagucucaucacgGGAACGGGGAgAGCGGGg -3'
miRNA:   3'- -CgGCGGCUa--------------CUUUGUCCCUaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 156891 0.76 0.692247
Target:  5'- cGCUGcCCGAUGgcACGGGGGgcgacgggccggAGCGGGg -3'
miRNA:   3'- -CGGC-GGCUACuuUGUCCCUa-----------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 213596 0.76 0.704167
Target:  5'- aGCCGgCGAUGAccaGGCuguuGGGGUGGCGGu -3'
miRNA:   3'- -CGGCgGCUACU---UUGu---CCCUAUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 236160 0.76 0.720904
Target:  5'- cGUCGCCGGcgGGAccuagcggacgaugGguGGGGUGGCAGGa -3'
miRNA:   3'- -CGGCGGCUa-CUU--------------UguCCCUAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 97840 0.76 0.733561
Target:  5'- aCCGCCGGUGcGACagagAGGGGU-GCGGGc -3'
miRNA:   3'- cGGCGGCUACuUUG----UCCCUAuCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 97573 0.75 0.740317
Target:  5'- gGCCGCgGAUGGAGguGGuGAUgacgugcucguuggAGCAGGu -3'
miRNA:   3'- -CGGCGgCUACUUUguCC-CUA--------------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 112073 0.75 0.752742
Target:  5'- cGCCG-CGGUGggGauCAGGGGcggcUGGCGGGa -3'
miRNA:   3'- -CGGCgGCUACuuU--GUCCCU----AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 110705 0.75 0.771508
Target:  5'- cGCCGCCGAcGAcGCAGGG---GCAGa -3'
miRNA:   3'- -CGGCGGCUaCUuUGUCCCuauCGUCc -5'
14585 5' -52.6 NC_003521.1 + 18733 0.74 0.798728
Target:  5'- cGCUGCCGgcGcuGCAGGGcgGGCuguGGg -3'
miRNA:   3'- -CGGCGGCuaCuuUGUCCCuaUCGu--CC- -5'
14585 5' -52.6 NC_003521.1 + 201909 0.74 0.807518
Target:  5'- uGCCGCCacGAcacaGAGGCGGGGAcgccGCAGGa -3'
miRNA:   3'- -CGGCGG--CUa---CUUUGUCCCUau--CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 1682 0.74 0.807518
Target:  5'- uGCCGCCacGAcacaGAGGCGGGGAcgccGCAGGa -3'
miRNA:   3'- -CGGCGG--CUa---CUUUGUCCCUau--CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 136672 0.74 0.816154
Target:  5'- cGCCGCCGccGcagagcaccGAGCAGGGcgggcccgAGCAGGa -3'
miRNA:   3'- -CGGCGGCuaC---------UUUGUCCCua------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 109470 0.73 0.841051
Target:  5'- uGCCGCCGAUGAGcuugcgacggcACGGGGcgaAGCGc- -3'
miRNA:   3'- -CGGCGGCUACUU-----------UGUCCCua-UCGUcc -5'
14585 5' -52.6 NC_003521.1 + 148979 0.73 0.841051
Target:  5'- cGCCGCCc-UGGAGgGGGGAUGGgAGa -3'
miRNA:   3'- -CGGCGGcuACUUUgUCCCUAUCgUCc -5'
14585 5' -52.6 NC_003521.1 + 124155 0.73 0.84899
Target:  5'- cGCCGCCGcUGccguGCAGGcGAUAGCGc- -3'
miRNA:   3'- -CGGCGGCuACuu--UGUCC-CUAUCGUcc -5'
14585 5' -52.6 NC_003521.1 + 134968 0.73 0.84899
Target:  5'- --gGCUGAUGAAGguGGGcuugugcagccgGUAGCAGGg -3'
miRNA:   3'- cggCGGCUACUUUguCCC------------UAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 196884 0.73 0.856736
Target:  5'- aCCGCgGGUGAGGCcGGGGcggaaGGCGGGu -3'
miRNA:   3'- cGGCGgCUACUUUGuCCCUa----UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 77271 0.73 0.864284
Target:  5'- cGCCGCCGGgcaccAGCAGGGuggaGUAGCacAGGu -3'
miRNA:   3'- -CGGCGGCUacu--UUGUCCC----UAUCG--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.