Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14585 | 5' | -52.6 | NC_003521.1 | + | 215622 | 0.66 | 0.994618 |
Target: 5'- gGCCGUcuuguCGGUGAgGACGGGGcUccgcauggucgcGGCGGGa -3' miRNA: 3'- -CGGCG-----GCUACU-UUGUCCCuA------------UCGUCC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 117768 | 0.66 | 0.995347 |
Target: 5'- cGCCGCCGucccAGCAGcauGGUGGCGGcGg -3' miRNA: 3'- -CGGCGGCuacuUUGUCc--CUAUCGUC-C- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 206161 | 0.66 | 0.992884 |
Target: 5'- gGCCuCCGAgaagcccaGGAGCAGGGcgGcCAGGg -3' miRNA: 3'- -CGGcGGCUa-------CUUUGUCCCuaUcGUCC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 137248 | 0.66 | 0.993799 |
Target: 5'- gGCCgggGCCGAcgGcgGCAGcGGGcagAGCGGGg -3' miRNA: 3'- -CGG---CGGCUa-CuuUGUC-CCUa--UCGUCC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 160508 | 0.66 | 0.995347 |
Target: 5'- aCCGCgGcgGGAGgAGGGGgcGGCAGc -3' miRNA: 3'- cGGCGgCuaCUUUgUCCCUa-UCGUCc -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 217626 | 0.66 | 0.992884 |
Target: 5'- gGCCGCCaucuccucggcGUGGu-CGGGGGgcaUGGCGGGa -3' miRNA: 3'- -CGGCGGc----------UACUuuGUCCCU---AUCGUCC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 10496 | 0.66 | 0.994618 |
Target: 5'- -gCGCCG-----GCGGGGAUGGCGuGGc -3' miRNA: 3'- cgGCGGCuacuuUGUCCCUAUCGU-CC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 32682 | 0.66 | 0.995347 |
Target: 5'- aGCUGCCGGaucGAGgcgccACGGGGcuaauAUAGCuAGGg -3' miRNA: 3'- -CGGCGGCUa--CUU-----UGUCCC-----UAUCG-UCC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 193285 | 0.66 | 0.992884 |
Target: 5'- uGCCGggaCGGgcgucgGAGucggcGCGGGGGUGGUGGGc -3' miRNA: 3'- -CGGCg--GCUa-----CUU-----UGUCCCUAUCGUCC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 214161 | 0.66 | 0.992786 |
Target: 5'- aGCCGCgGAUGGcuuggucGACGGGcaguucGGUGGCAa- -3' miRNA: 3'- -CGGCGgCUACU-------UUGUCC------CUAUCGUcc -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 155383 | 0.66 | 0.995993 |
Target: 5'- cGCCGgCGcgGAcgacgaggccGGCGGGGGgcugGGCAccGGa -3' miRNA: 3'- -CGGCgGCuaCU----------UUGUCCCUa---UCGU--CC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 111193 | 0.66 | 0.995347 |
Target: 5'- cGCCGCggaCGGUGGGcUGGGcGAUGGCGccGGa -3' miRNA: 3'- -CGGCG---GCUACUUuGUCC-CUAUCGU--CC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 238676 | 0.66 | 0.993799 |
Target: 5'- uGCUGCUGcUGGAGCAGGuc-GGCGGc -3' miRNA: 3'- -CGGCGGCuACUUUGUCCcuaUCGUCc -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 100227 | 0.66 | 0.993799 |
Target: 5'- gGCCGgCGAggUGGAGCuGGGcgAGguGc -3' miRNA: 3'- -CGGCgGCU--ACUUUGuCCCuaUCguCc -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 116384 | 0.66 | 0.993799 |
Target: 5'- uGCCGCgCGAcguggUGGAACGuugguuGGGUAGCGGcGg -3' miRNA: 3'- -CGGCG-GCU-----ACUUUGUc-----CCUAUCGUC-C- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 38004 | 0.66 | 0.995278 |
Target: 5'- aGUCGCCGGcgcUGAGGCGGGuuuguucGAcGGCGGu -3' miRNA: 3'- -CGGCGGCU---ACUUUGUCC-------CUaUCGUCc -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 281 | 0.66 | 0.995994 |
Target: 5'- cGCUGCgCGGauAGACuAGGG-UGGUAGGg -3' miRNA: 3'- -CGGCG-GCUacUUUG-UCCCuAUCGUCC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 113095 | 0.66 | 0.993799 |
Target: 5'- gGCCGCCG-UGguGCAGG---AGCGGc -3' miRNA: 3'- -CGGCGGCuACuuUGUCCcuaUCGUCc -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 29749 | 0.66 | 0.992884 |
Target: 5'- cCCGCCGGgcaacgGcGACAGaGcGAgAGCAGGa -3' miRNA: 3'- cGGCGGCUa-----CuUUGUC-C-CUaUCGUCC- -5' |
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14585 | 5' | -52.6 | NC_003521.1 | + | 118219 | 0.66 | 0.992589 |
Target: 5'- gGCCGCCGccGucGCcGGGGUGGUcaaugccucgugucGGGu -3' miRNA: 3'- -CGGCGGCuaCuuUGuCCCUAUCG--------------UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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