miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 5' -52.6 NC_003521.1 + 229143 0.71 0.922501
Target:  5'- aCCGCCaaccguUGGGcGCGGGGAUAgGCAGGc -3'
miRNA:   3'- cGGCGGcu----ACUU-UGUCCCUAU-CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 120948 0.72 0.885684
Target:  5'- uCCGgCGA-GggGCAGGG--GGCGGGg -3'
miRNA:   3'- cGGCgGCUaCuuUGUCCCuaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 165431 0.72 0.885684
Target:  5'- cUUGCUGGUGuucuuGGGCgAGGGGUGGCAGGc -3'
miRNA:   3'- cGGCGGCUAC-----UUUG-UCCCUAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 54075 0.72 0.898866
Target:  5'- uGCCGCCGAgccccAGCAuGGGcucgccUAGCAGGu -3'
miRNA:   3'- -CGGCGGCUacu--UUGU-CCCu-----AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 168405 0.72 0.905119
Target:  5'- uGCCGCCGuUGGuGGCuAGGGcgggcGGCAGGg -3'
miRNA:   3'- -CGGCGGCuACU-UUG-UCCCua---UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 36062 0.72 0.905119
Target:  5'- cGCCGCCGAcacAACAGGGc-GGCGGcGg -3'
miRNA:   3'- -CGGCGGCUacuUUGUCCCuaUCGUC-C- -5'
14585 5' -52.6 NC_003521.1 + 100998 0.71 0.910552
Target:  5'- cGCuCGCUGAggGAgGACAGGGGcgcguccUGGCGGGc -3'
miRNA:   3'- -CG-GCGGCUa-CU-UUGUCCCU-------AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 38744 0.71 0.911144
Target:  5'- uGCUGCCGAUGGAGgauuuauuCGGGGAaGGCu-- -3'
miRNA:   3'- -CGGCGGCUACUUU--------GUCCCUaUCGucc -5'
14585 5' -52.6 NC_003521.1 + 71418 0.71 0.91349
Target:  5'- gGCgGCCccgaaccugacagagGAcGAGGCGGGGAUcGCGGGg -3'
miRNA:   3'- -CGgCGG---------------CUaCUUUGUCCCUAuCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 100493 0.73 0.874508
Target:  5'- cGCCGCCaGGUGGcaccGCGGGcgucggacggugcacGGUGGCGGGa -3'
miRNA:   3'- -CGGCGG-CUACUu---UGUCC---------------CUAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 40875 0.73 0.869447
Target:  5'- aGCCGCgGAgggaagggaccGggGCGGGGGUcaguuuaauagcgaGGCGGGg -3'
miRNA:   3'- -CGGCGgCUa----------CuuUGUCCCUA--------------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 77271 0.73 0.864284
Target:  5'- cGCCGCCGGgcaccAGCAGGGuggaGUAGCacAGGu -3'
miRNA:   3'- -CGGCGGCUacu--UUGUCCC----UAUCG--UCC- -5'
14585 5' -52.6 NC_003521.1 + 213596 0.76 0.704167
Target:  5'- aGCCGgCGAUGAccaGGCuguuGGGGUGGCGGu -3'
miRNA:   3'- -CGGCgGCUACU---UUGu---CCCUAUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 112073 0.75 0.752742
Target:  5'- cGCCG-CGGUGggGauCAGGGGcggcUGGCGGGa -3'
miRNA:   3'- -CGGCgGCUACuuU--GUCCCU----AUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 201909 0.74 0.807518
Target:  5'- uGCCGCCacGAcacaGAGGCGGGGAcgccGCAGGa -3'
miRNA:   3'- -CGGCGG--CUa---CUUUGUCCCUau--CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 136672 0.74 0.816154
Target:  5'- cGCCGCCGccGcagagcaccGAGCAGGGcgggcccgAGCAGGa -3'
miRNA:   3'- -CGGCGGCuaC---------UUUGUCCCua------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 134968 0.73 0.84899
Target:  5'- --gGCUGAUGAAGguGGGcuugugcagccgGUAGCAGGg -3'
miRNA:   3'- cggCGGCUACUUUguCCC------------UAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 124155 0.73 0.84899
Target:  5'- cGCCGCCGcUGccguGCAGGcGAUAGCGc- -3'
miRNA:   3'- -CGGCGGCuACuu--UGUCC-CUAUCGUcc -5'
14585 5' -52.6 NC_003521.1 + 196884 0.73 0.856736
Target:  5'- aCCGCgGGUGAGGCcGGGGcggaaGGCGGGu -3'
miRNA:   3'- cGGCGgCUACUUUGuCCCUa----UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 55975 0.73 0.864284
Target:  5'- -aCGCCGAUGu-GCAGGGGccGCAGc -3'
miRNA:   3'- cgGCGGCUACuuUGUCCCUauCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.