miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14587 3' -54.1 NC_003521.1 + 178871 0.66 0.986216
Target:  5'- --cGGGcaGUaGAGCGAGGCCGcCUGuuGCGu -3'
miRNA:   3'- gcaCCC--UAaCUCGUUCCGGU-GAC--UGC- -5'
14587 3' -54.1 NC_003521.1 + 53094 0.66 0.986216
Target:  5'- aCGUGGcGA-UGAGaCAAGucacguaCCGCUGGCGa -3'
miRNA:   3'- -GCACC-CUaACUC-GUUCc------GGUGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 55929 0.66 0.986216
Target:  5'- aCG-GGGGUgccagcgGGGUauGAGGCCuCUGugGa -3'
miRNA:   3'- -GCaCCCUAa------CUCG--UUCCGGuGACugC- -5'
14587 3' -54.1 NC_003521.1 + 87092 0.66 0.986216
Target:  5'- gGUGGGccacggUGGGCAucguGCCGCUGGUGg -3'
miRNA:   3'- gCACCCua----ACUCGUuc--CGGUGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 197403 0.66 0.984525
Target:  5'- --cGGGAcUGGGUGucuGGCCAC-GACGc -3'
miRNA:   3'- gcaCCCUaACUCGUu--CCGGUGaCUGC- -5'
14587 3' -54.1 NC_003521.1 + 113581 0.66 0.984525
Target:  5'- gGUGGGGcUGGGCcucgGGGGCaACgggGGCGg -3'
miRNA:   3'- gCACCCUaACUCG----UUCCGgUGa--CUGC- -5'
14587 3' -54.1 NC_003521.1 + 26532 0.66 0.982681
Target:  5'- cCGUGGuGA-UGGGCAuccuGGCCuccuccuaccaGCUGAUGc -3'
miRNA:   3'- -GCACC-CUaACUCGUu---CCGG-----------UGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 168422 0.66 0.982681
Target:  5'- --aGGGcggGcGGCAGGGCCGCggcGGCGg -3'
miRNA:   3'- gcaCCCuaaC-UCGUUCCGGUGa--CUGC- -5'
14587 3' -54.1 NC_003521.1 + 3759 0.66 0.980676
Target:  5'- --cGGGAUgGAGCGA-GCC-CUGAUGu -3'
miRNA:   3'- gcaCCCUAaCUCGUUcCGGuGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 129219 0.66 0.980676
Target:  5'- gCGUGG---UGGGCAguccGGcGCCGCUGGCc -3'
miRNA:   3'- -GCACCcuaACUCGU----UC-CGGUGACUGc -5'
14587 3' -54.1 NC_003521.1 + 215241 0.66 0.977585
Target:  5'- cCGUcaGGGugaaGAGCGAGGCCGCcaacagcuggaagGGCGa -3'
miRNA:   3'- -GCA--CCCuaa-CUCGUUCCGGUGa------------CUGC- -5'
14587 3' -54.1 NC_003521.1 + 4128 0.67 0.976154
Target:  5'- gGUGGGAUacggGAGCG-GGCCGgcGGCu -3'
miRNA:   3'- gCACCCUAa---CUCGUuCCGGUgaCUGc -5'
14587 3' -54.1 NC_003521.1 + 84766 0.67 0.976154
Target:  5'- uCGaUGucGUUGAGCGuGGCCagGCUGACGc -3'
miRNA:   3'- -GC-ACccUAACUCGUuCCGG--UGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 155403 0.67 0.976154
Target:  5'- cCGgcggGGGGcUGGGCAccggAGGCCuGCUGcCGg -3'
miRNA:   3'- -GCa---CCCUaACUCGU----UCCGG-UGACuGC- -5'
14587 3' -54.1 NC_003521.1 + 119907 0.67 0.973622
Target:  5'- gGUGGGccugGAaCAGGuggauGCCGCUGACGg -3'
miRNA:   3'- gCACCCuaa-CUcGUUC-----CGGUGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 116018 0.67 0.972557
Target:  5'- aGUGGGAgcuggugcugcccUGGGuCAucccGGuGCCACUGGCGc -3'
miRNA:   3'- gCACCCUa------------ACUC-GU----UC-CGGUGACUGC- -5'
14587 3' -54.1 NC_003521.1 + 111189 0.67 0.964867
Target:  5'- aCG-GGGAcgUUGAGCAcccgccGGGCgGCcGGCGa -3'
miRNA:   3'- -GCaCCCU--AACUCGU------UCCGgUGaCUGC- -5'
14587 3' -54.1 NC_003521.1 + 186545 0.67 0.964867
Target:  5'- cCGUGGGA---GGCAGGGCCGgc-ACGa -3'
miRNA:   3'- -GCACCCUaacUCGUUCCGGUgacUGC- -5'
14587 3' -54.1 NC_003521.1 + 121321 0.67 0.964867
Target:  5'- uCGUGGGA---GGUgAAGGCCACguccagcaUGACGu -3'
miRNA:   3'- -GCACCCUaacUCG-UUCCGGUG--------ACUGC- -5'
14587 3' -54.1 NC_003521.1 + 164674 0.68 0.961541
Target:  5'- aCGUGGuGAaccccgUGAcGaCGAGGCCggcgGCUGACGa -3'
miRNA:   3'- -GCACC-CUa-----ACU-C-GUUCCGG----UGACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.