Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14587 | 3' | -54.1 | NC_003521.1 | + | 100685 | 0.68 | 0.941654 |
Target: 5'- aGUGGuGAUgcUGAuGCGGaggcgccgccgcGGCCGCUGAUGg -3' miRNA: 3'- gCACC-CUA--ACU-CGUU------------CCGGUGACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 124199 | 0.68 | 0.946078 |
Target: 5'- -cUGGGggUGAGC-GGGCCcuuuCUGGCc -3' miRNA: 3'- gcACCCuaACUCGuUCCGGu---GACUGc -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 77666 | 0.68 | 0.961197 |
Target: 5'- cCGUcGGGAgacAGCAggccgggGGGCaCGCUGGCGa -3' miRNA: 3'- -GCA-CCCUaacUCGU-------UCCG-GUGACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 98229 | 0.68 | 0.958004 |
Target: 5'- gCGUGGGAggcgggGAgGCGGgggcGGCCAC-GGCGg -3' miRNA: 3'- -GCACCCUaa----CU-CGUU----CCGGUGaCUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 197308 | 0.68 | 0.958004 |
Target: 5'- --cGGGAgaggGGGCGgcAGGC-GCUGACGg -3' miRNA: 3'- gcaCCCUaa--CUCGU--UCCGgUGACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 111189 | 0.67 | 0.964867 |
Target: 5'- aCG-GGGAcgUUGAGCAcccgccGGGCgGCcGGCGa -3' miRNA: 3'- -GCaCCCU--AACUCGU------UCCGgUGaCUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 116018 | 0.67 | 0.972557 |
Target: 5'- aGUGGGAgcuggugcugcccUGGGuCAucccGGuGCCACUGGCGc -3' miRNA: 3'- gCACCCUa------------ACUC-GU----UC-CGGUGACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 155403 | 0.67 | 0.976154 |
Target: 5'- cCGgcggGGGGcUGGGCAccggAGGCCuGCUGcCGg -3' miRNA: 3'- -GCa---CCCUaACUCGU----UCCGG-UGACuGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 26532 | 0.66 | 0.982681 |
Target: 5'- cCGUGGuGA-UGGGCAuccuGGCCuccuccuaccaGCUGAUGc -3' miRNA: 3'- -GCACC-CUaACUCGUu---CCGG-----------UGACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 87092 | 0.66 | 0.986216 |
Target: 5'- gGUGGGccacggUGGGCAucguGCCGCUGGUGg -3' miRNA: 3'- gCACCCua----ACUCGUuc--CGGUGACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 95424 | 0.68 | 0.958004 |
Target: 5'- gGUGGGGUcgaUGAGC-AGGCC-CaGGCc -3' miRNA: 3'- gCACCCUA---ACUCGuUCCGGuGaCUGc -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 201531 | 0.68 | 0.95425 |
Target: 5'- -cUGGGAgaGuGUGAcGCCGCUGACGg -3' miRNA: 3'- gcACCCUaaCuCGUUcCGGUGACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 198952 | 0.68 | 0.941654 |
Target: 5'- aGUGGaGGUUGGGCAccAGGCgcgagagcgUGCUGACc -3' miRNA: 3'- gCACC-CUAACUCGU--UCCG---------GUGACUGc -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 44951 | 0.68 | 0.940741 |
Target: 5'- --gGGGAUgggcagucccgaGAGCGAGGCgacagCGCUGACGc -3' miRNA: 3'- gcaCCCUAa-----------CUCGUUCCG-----GUGACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 37535 | 0.69 | 0.937 |
Target: 5'- -cUGGGggUGGGCAgcggGGGUCGC-GGCGg -3' miRNA: 3'- gcACCCuaACUCGU----UCCGGUGaCUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 130977 | 0.69 | 0.932117 |
Target: 5'- gGUGGGGgcagUGAGCAcGGuacCCAgcCUGACGc -3' miRNA: 3'- gCACCCUa---ACUCGUuCC---GGU--GACUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 114747 | 0.69 | 0.921655 |
Target: 5'- cCGUGGGggUG-GCGcGGCCACagcgcugGACa -3' miRNA: 3'- -GCACCCuaACuCGUuCCGGUGa------CUGc -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 126309 | 0.69 | 0.921655 |
Target: 5'- cCGUGGcGGcggUGGGCAcggcGGCCAC-GACGg -3' miRNA: 3'- -GCACC-CUa--ACUCGUu---CCGGUGaCUGC- -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 45810 | 0.71 | 0.840153 |
Target: 5'- --aGGGGga-GGCgAAGGCCACUGGCa -3' miRNA: 3'- gcaCCCUaacUCG-UUCCGGUGACUGc -5' |
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14587 | 3' | -54.1 | NC_003521.1 | + | 55929 | 0.66 | 0.986216 |
Target: 5'- aCG-GGGGUgccagcgGGGUauGAGGCCuCUGugGa -3' miRNA: 3'- -GCaCCCUAa------CUCG--UUCCGGuGACugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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