miRNA display CGI


Results 41 - 60 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 123992 0.66 0.817971
Target:  5'- gGCCguCAGGUcuggaaaccgcuGCAGCacccagucGGgGUCGCGGCCg -3'
miRNA:   3'- gCGG--GUCCA------------CGUUG--------UCgCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 167996 0.66 0.817971
Target:  5'- gCGCaCAGG-GUGACGGCGUCGaacaGGUCu -3'
miRNA:   3'- -GCGgGUCCaCGUUGUCGCGGUg---CCGG- -5'
14588 3' -60.8 NC_003521.1 + 103048 0.66 0.817971
Target:  5'- uGCgCAGGUGCugcaGACAGgGCgggugCGCGGgCg -3'
miRNA:   3'- gCGgGUCCACG----UUGUCgCG-----GUGCCgG- -5'
14588 3' -60.8 NC_003521.1 + 203709 0.66 0.817971
Target:  5'- cCGCCagUAGcGacgGCAGCAGCaGCCGgGGCg -3'
miRNA:   3'- -GCGG--GUC-Ca--CGUUGUCG-CGGUgCCGg -5'
14588 3' -60.8 NC_003521.1 + 32395 0.66 0.817971
Target:  5'- gGUCCucgGGcGUGCGACacagcagcccguGGCG-CACGGCCu -3'
miRNA:   3'- gCGGG---UC-CACGUUG------------UCGCgGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 224161 0.66 0.817158
Target:  5'- cCGuCCCAGGUguugaGCAucucggcccgaaaGCGGuCGCCGCGacagaGCCa -3'
miRNA:   3'- -GC-GGGUCCA-----CGU-------------UGUC-GCGGUGC-----CGG- -5'
14588 3' -60.8 NC_003521.1 + 226607 0.66 0.817158
Target:  5'- aGCCCAGcG-GCGucaggggcucgccGCAGCacaccagcuuGCuCGCGGCCu -3'
miRNA:   3'- gCGGGUC-CaCGU-------------UGUCG----------CG-GUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 176167 0.66 0.815528
Target:  5'- aGCCCgguggcAGGUGguugaugagcgaguUGACGGCGUCgaagaccuGCGGCCg -3'
miRNA:   3'- gCGGG------UCCAC--------------GUUGUCGCGG--------UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 200407 0.66 0.81471
Target:  5'- gGCCguGGUGgacagcaccgaguuCGACAgcgagguGCGCCACGacGCCg -3'
miRNA:   3'- gCGGguCCAC--------------GUUGU-------CGCGGUGC--CGG- -5'
14588 3' -60.8 NC_003521.1 + 161615 0.66 0.812249
Target:  5'- uGCCCucGG-GCAACgugcugcguuucuucGGCGCCaccgagcACGGCUa -3'
miRNA:   3'- gCGGGu-CCaCGUUG---------------UCGCGG-------UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 95773 0.66 0.809775
Target:  5'- cCGCCCAGacgGUcAUcGUGCCGCucGGCCa -3'
miRNA:   3'- -GCGGGUCca-CGuUGuCGCGGUG--CCGG- -5'
14588 3' -60.8 NC_003521.1 + 238435 0.66 0.809775
Target:  5'- gGUCgAGGUcggGCAGgaGGCGCaggGCGGCCu -3'
miRNA:   3'- gCGGgUCCA---CGUUg-UCGCGg--UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 90 0.66 0.809775
Target:  5'- uGCCgCGGGcgUGCAGggaGGCcgaaGCgGCGGCCg -3'
miRNA:   3'- gCGG-GUCC--ACGUUg--UCG----CGgUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 208590 0.66 0.809775
Target:  5'- aCGCUCGaGUGgGACcuGGcCGUCugGGCCg -3'
miRNA:   3'- -GCGGGUcCACgUUG--UC-GCGGugCCGG- -5'
14588 3' -60.8 NC_003521.1 + 197318 0.66 0.809775
Target:  5'- gGCggCAGGcGCuGACGGauguuggcCGCCGCGGCCa -3'
miRNA:   3'- gCGg-GUCCaCG-UUGUC--------GCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 55982 0.66 0.809775
Target:  5'- uGUgCAGGgGCcGCAGCcgguCCACGGCg -3'
miRNA:   3'- gCGgGUCCaCGuUGUCGc---GGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 181927 0.66 0.809775
Target:  5'- gCGCauggagaCGGGcUGCGACucgccGCGCCACcucuacgugGGCCu -3'
miRNA:   3'- -GCGg------GUCC-ACGUUGu----CGCGGUG---------CCGG- -5'
14588 3' -60.8 NC_003521.1 + 87327 0.66 0.809775
Target:  5'- gCGCCUggAGGcGCAGCuGCGCgGCaagGGCa -3'
miRNA:   3'- -GCGGG--UCCaCGUUGuCGCGgUG---CCGg -5'
14588 3' -60.8 NC_003521.1 + 6375 0.66 0.809775
Target:  5'- gGUCgGGGUcGCGGaggGGCGCCGCaGCUa -3'
miRNA:   3'- gCGGgUCCA-CGUUg--UCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 204736 0.66 0.809775
Target:  5'- gGCgaGGGUGguGauggaGGCGCCGCcGCCg -3'
miRNA:   3'- gCGggUCCACguUg----UCGCGGUGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.