miRNA display CGI


Results 21 - 40 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 46278 0.66 0.826016
Target:  5'- gCGCagAGGUGCAugACGGagcuguugucCGCCAaGGCCu -3'
miRNA:   3'- -GCGggUCCACGU--UGUC----------GCGGUgCCGG- -5'
14588 3' -60.8 NC_003521.1 + 80520 0.66 0.825219
Target:  5'- -cCCCGGGgagGCGGCAGCGacgaCgaguacgacgacgACGGCUa -3'
miRNA:   3'- gcGGGUCCa--CGUUGUCGCg---G-------------UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 74566 0.66 0.825219
Target:  5'- uGUCUgAGGgcgGCGacggagcggcggcGCGGCGucCCGCGGCCg -3'
miRNA:   3'- gCGGG-UCCa--CGU-------------UGUCGC--GGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 161331 0.66 0.825219
Target:  5'- gCGCuCCGGcGUGCAgaaGCAGUucaugcagaucguGCCGCGGg- -3'
miRNA:   3'- -GCG-GGUC-CACGU---UGUCG-------------CGGUGCCgg -5'
14588 3' -60.8 NC_003521.1 + 120219 0.66 0.825219
Target:  5'- uGaCCAGGcGCAacaccugGCAGUGCaucCGGCCg -3'
miRNA:   3'- gCgGGUCCaCGU-------UGUCGCGgu-GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 102349 0.66 0.825219
Target:  5'- aCGCCgGGGUgGCGGCAGgCGCUcuugaagaaguacACGggguGCCg -3'
miRNA:   3'- -GCGGgUCCA-CGUUGUC-GCGG-------------UGC----CGG- -5'
14588 3' -60.8 NC_003521.1 + 45585 0.66 0.8204
Target:  5'- uCGCCCuacucGGUGgccuacaaccagcacCGACaucAGCGCCgacgcagACGGCCa -3'
miRNA:   3'- -GCGGGu----CCAC---------------GUUG---UCGCGG-------UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 140088 0.66 0.818782
Target:  5'- aGCUCGGGgugcaucaucugguaGCGcuugcgacACAGCGCCGCcacguuggugaaGGCCg -3'
miRNA:   3'- gCGGGUCCa--------------CGU--------UGUCGCGGUG------------CCGG- -5'
14588 3' -60.8 NC_003521.1 + 32395 0.66 0.817971
Target:  5'- gGUCCucgGGcGUGCGACacagcagcccguGGCG-CACGGCCu -3'
miRNA:   3'- gCGGG---UC-CACGUUG------------UCGCgGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 142757 0.66 0.817971
Target:  5'- aCGaCgGGGUGac-CAGCGuCCGCGGCg -3'
miRNA:   3'- -GCgGgUCCACguuGUCGC-GGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 132435 0.66 0.817971
Target:  5'- gGgUCGGGUuaGCGuGCGGCGCCugucUGGCCu -3'
miRNA:   3'- gCgGGUCCA--CGU-UGUCGCGGu---GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 203709 0.66 0.817971
Target:  5'- cCGCCagUAGcGacgGCAGCAGCaGCCGgGGCg -3'
miRNA:   3'- -GCGG--GUC-Ca--CGUUGUCG-CGGUgCCGg -5'
14588 3' -60.8 NC_003521.1 + 98960 0.66 0.817971
Target:  5'- gGCCUgguggcuGGUGaGGCGGUGCCGgGaGCCg -3'
miRNA:   3'- gCGGGu------CCACgUUGUCGCGGUgC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 174681 0.66 0.817971
Target:  5'- gCGCUgCGGGUGCGAgGGgucccCGCugaucuguuuCACGGCCu -3'
miRNA:   3'- -GCGG-GUCCACGUUgUC-----GCG----------GUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 123992 0.66 0.817971
Target:  5'- gGCCguCAGGUcuggaaaccgcuGCAGCacccagucGGgGUCGCGGCCg -3'
miRNA:   3'- gCGG--GUCCA------------CGUUG--------UCgCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 122229 0.66 0.817971
Target:  5'- aGCgCGGGUGCcggcGACugAGCGCCGCcacgucgcugGGCg -3'
miRNA:   3'- gCGgGUCCACG----UUG--UCGCGGUG----------CCGg -5'
14588 3' -60.8 NC_003521.1 + 228263 0.66 0.817971
Target:  5'- aCGCCCGGGcaucuccagacGCu-CGGCGuccuCCACGGCg -3'
miRNA:   3'- -GCGGGUCCa----------CGuuGUCGC----GGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 88772 0.66 0.817971
Target:  5'- aGCUgacggaccugCGGGUGaAGCAcCGCUGCGGCCu -3'
miRNA:   3'- gCGG----------GUCCACgUUGUcGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 207104 0.66 0.817971
Target:  5'- gCGUCagaAGuUGCGGgAGCGCUugGGCg -3'
miRNA:   3'- -GCGGg--UCcACGUUgUCGCGGugCCGg -5'
14588 3' -60.8 NC_003521.1 + 49807 0.66 0.817971
Target:  5'- cCGCCCgaauggcuGGGcGCcguGCAguGCGCCgugcagACGGCCg -3'
miRNA:   3'- -GCGGG--------UCCaCGu--UGU--CGCGG------UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.