miRNA display CGI


Results 21 - 40 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 14534 0.74 0.376294
Target:  5'- aCGCCCgAGG-GCucguaCGCCACGGCCg -3'
miRNA:   3'- -GCGGG-UCCaCGuugucGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 14726 0.71 0.503041
Target:  5'- aCGCCguGGUaucuguugggcGUGACGGgccgGCCGCGGCCg -3'
miRNA:   3'- -GCGGguCCA-----------CGUUGUCg---CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 15158 0.66 0.826016
Target:  5'- aCGCCUuGGUGCuGCAcCGCUACGacaCCa -3'
miRNA:   3'- -GCGGGuCCACGuUGUcGCGGUGCc--GG- -5'
14588 3' -60.8 NC_003521.1 + 15338 0.69 0.645034
Target:  5'- gCGCgCuGGUGCAGCAGuCGCgACuGGUg -3'
miRNA:   3'- -GCGgGuCCACGUUGUC-GCGgUG-CCGg -5'
14588 3' -60.8 NC_003521.1 + 15668 0.68 0.702393
Target:  5'- gCGCCgAGGUGguGC-GCGaCugGGUCc -3'
miRNA:   3'- -GCGGgUCCACguUGuCGCgGugCCGG- -5'
14588 3' -60.8 NC_003521.1 + 15753 0.68 0.692921
Target:  5'- gCGCCC-GG-GCAGCAGCauGCC-CGaGCUa -3'
miRNA:   3'- -GCGGGuCCaCGUUGUCG--CGGuGC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 15956 0.66 0.801437
Target:  5'- aGCaCCuGGa-CGACuggcGCGCUACGGCCu -3'
miRNA:   3'- gCG-GGuCCacGUUGu---CGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 16204 0.68 0.721172
Target:  5'- gGCCCuucgAGGUG--GCGGCGCCcugccgccUGGCCg -3'
miRNA:   3'- gCGGG----UCCACguUGUCGCGGu-------GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 16401 0.66 0.78436
Target:  5'- uCGCCCAc---CAcGCAGCGCC-UGGCCg -3'
miRNA:   3'- -GCGGGUccacGU-UGUCGCGGuGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 16786 0.74 0.361086
Target:  5'- aGuCCCAGGgGCGACGGCGCCcGCcccgaccgccgGGCCc -3'
miRNA:   3'- gC-GGGUCCaCGUUGUCGCGG-UG-----------CCGG- -5'
14588 3' -60.8 NC_003521.1 + 17006 0.77 0.238422
Target:  5'- gCGCCCGcGGUgGCGGCGGCGCa--GGCCc -3'
miRNA:   3'- -GCGGGU-CCA-CGUUGUCGCGgugCCGG- -5'
14588 3' -60.8 NC_003521.1 + 17044 0.71 0.530649
Target:  5'- gGCCCAcGGcgGUAACGGCGCCgACaGCg -3'
miRNA:   3'- gCGGGU-CCa-CGUUGUCGCGG-UGcCGg -5'
14588 3' -60.8 NC_003521.1 + 17352 0.7 0.596914
Target:  5'- -uCCCGGGccGUGACgccGGCGCgGCGGCCc -3'
miRNA:   3'- gcGGGUCCa-CGUUG---UCGCGgUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 17465 0.67 0.747903
Target:  5'- gCGCUCGgaggagagacgacGGcaccgGUAGCGGCGCCGcCGGUCa -3'
miRNA:   3'- -GCGGGU-------------CCa----CGUUGUCGCGGU-GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 17490 0.72 0.449849
Target:  5'- gGCCUGGGgcaccuaucUGCGGCAGCGCgACGaGCg -3'
miRNA:   3'- gCGGGUCC---------ACGUUGUCGCGgUGC-CGg -5'
14588 3' -60.8 NC_003521.1 + 17702 0.67 0.730463
Target:  5'- gGCuCCuGGUGCuGC-GCGagACGGCCg -3'
miRNA:   3'- gCG-GGuCCACGuUGuCGCggUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 18880 0.68 0.683404
Target:  5'- aGCUgAGcaGCGACgaggacgaGGCGCCGCGGCa -3'
miRNA:   3'- gCGGgUCcaCGUUG--------UCGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 18913 0.68 0.692921
Target:  5'- aGCCCcgaAGG-GU---GGCGCCGCGcGCCg -3'
miRNA:   3'- gCGGG---UCCaCGuugUCGCGGUGC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 19481 0.67 0.748813
Target:  5'- gCGgCCAGGUGCAGguG-GCCcgcuCGGUg -3'
miRNA:   3'- -GCgGGUCCACGUUguCgCGGu---GCCGg -5'
14588 3' -60.8 NC_003521.1 + 19660 0.68 0.692921
Target:  5'- uGCCUGGG-GCuGCuGCG-CugGGCCg -3'
miRNA:   3'- gCGGGUCCaCGuUGuCGCgGugCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.