miRNA display CGI


Results 21 - 40 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 117456 0.78 0.212532
Target:  5'- cCGCCUgucGGUGCGGCuGUcggagGCCACGGCCg -3'
miRNA:   3'- -GCGGGu--CCACGUUGuCG-----CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 6083 0.78 0.217509
Target:  5'- aCGgCC-GGUGCGGCGGCguuccGCCACGGCUa -3'
miRNA:   3'- -GCgGGuCCACGUUGUCG-----CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 214401 0.78 0.222585
Target:  5'- gCGCCCAGGUGagAAUGGCGCUagagACGGCg -3'
miRNA:   3'- -GCGGGUCCACg-UUGUCGCGG----UGCCGg -5'
14588 3' -60.8 NC_003521.1 + 152552 0.78 0.227763
Target:  5'- uGCUCAGGUaCGGCAGCGUCACGcGCUc -3'
miRNA:   3'- gCGGGUCCAcGUUGUCGCGGUGC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 169521 0.78 0.227763
Target:  5'- cCGcCCCAGGUGCuggugccccaggGGCccGUGCCGCGGCCc -3'
miRNA:   3'- -GC-GGGUCCACG------------UUGu-CGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 17006 0.77 0.238422
Target:  5'- gCGCCCGcGGUgGCGGCGGCGCa--GGCCc -3'
miRNA:   3'- -GCGGGU-CCA-CGUUGUCGCGgugCCGG- -5'
14588 3' -60.8 NC_003521.1 + 219070 0.77 0.249496
Target:  5'- gCGCCCAGGUGCAugaGCAGCGagaCCuguuCGGgCa -3'
miRNA:   3'- -GCGGGUCCACGU---UGUCGC---GGu---GCCgG- -5'
14588 3' -60.8 NC_003521.1 + 215444 0.77 0.25519
Target:  5'- aGCCgCGGGUGCu--GGCGCCA-GGCCg -3'
miRNA:   3'- gCGG-GUCCACGuugUCGCGGUgCCGG- -5'
14588 3' -60.8 NC_003521.1 + 206172 0.77 0.25519
Target:  5'- aGCCCAGGaGCAG-GGCgGCCAgGGCCg -3'
miRNA:   3'- gCGGGUCCaCGUUgUCG-CGGUgCCGG- -5'
14588 3' -60.8 NC_003521.1 + 115983 0.77 0.257498
Target:  5'- aCGCCCAGGUuguucauggucucgcGCAggaGCAGCGUCuccaGGCCg -3'
miRNA:   3'- -GCGGGUCCA---------------CGU---UGUCGCGGug--CCGG- -5'
14588 3' -60.8 NC_003521.1 + 197249 0.77 0.260991
Target:  5'- cCGCCCGaggagcGGUGCuugacGCGGCGCCGgCGGCg -3'
miRNA:   3'- -GCGGGU------CCACGu----UGUCGCGGU-GCCGg -5'
14588 3' -60.8 NC_003521.1 + 207134 0.77 0.260991
Target:  5'- aGUCCAGcUGCAGCGuuacgugcGgGCCACGGCCg -3'
miRNA:   3'- gCGGGUCcACGUUGU--------CgCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 111178 0.77 0.260991
Target:  5'- cCGCCCcg--GCGACGGCGCCGCGGaCg -3'
miRNA:   3'- -GCGGGuccaCGUUGUCGCGGUGCCgG- -5'
14588 3' -60.8 NC_003521.1 + 168417 0.77 0.260991
Target:  5'- uGgCUAGGgcggGCGGCAGgGCCGCGGCg -3'
miRNA:   3'- gCgGGUCCa---CGUUGUCgCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 142327 0.76 0.278419
Target:  5'- uCGCaaCUGGGUGCGcgaggccgccgccACGGcCGCCGCGGCCg -3'
miRNA:   3'- -GCG--GGUCCACGU-------------UGUC-GCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 191698 0.76 0.279037
Target:  5'- aGUCCccGcaGCAGCGGCGCCGCGGUCa -3'
miRNA:   3'- gCGGGucCa-CGUUGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 110901 0.76 0.279037
Target:  5'- uCGgCCAGGUGUucgcGCAGCagGCgCGCGGCCg -3'
miRNA:   3'- -GCgGGUCCACGu---UGUCG--CG-GUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 115376 0.76 0.283388
Target:  5'- uGgCCAGGgccgGCAugugcagggcgcggGCGGcCGCCACGGCCu -3'
miRNA:   3'- gCgGGUCCa---CGU--------------UGUC-GCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 106285 0.76 0.285269
Target:  5'- uCGCCguGGaggGCAACAGCaaccagGCgGCGGCCg -3'
miRNA:   3'- -GCGGguCCa--CGUUGUCG------CGgUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 110519 0.76 0.285269
Target:  5'- gGaCCUGGaUGC-GCGGCGCCGCGGCCu -3'
miRNA:   3'- gC-GGGUCcACGuUGUCGCGGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.