miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 210944 1.11 0.001371
Target:  5'- uCGCCCAGGUGCAACAGCGCCACGGCCu -3'
miRNA:   3'- -GCGGGUCCACGUUGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 99621 0.88 0.049678
Target:  5'- gCGCCCGGcG-GC-GCAGCGCCACGGCCa -3'
miRNA:   3'- -GCGGGUC-CaCGuUGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 74161 0.87 0.056429
Target:  5'- gGCCCAGGUGCcgcuggccGACuGCGCCGCGGCg -3'
miRNA:   3'- gCGGGUCCACG--------UUGuCGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 70744 0.86 0.064066
Target:  5'- uCGUCCAGcUGCAGC-GCGCCGCGGCCg -3'
miRNA:   3'- -GCGGGUCcACGUUGuCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 164426 0.85 0.082437
Target:  5'- cCGCCgCuGGUGCuAGCAGCGCCaccGCGGCCg -3'
miRNA:   3'- -GCGG-GuCCACG-UUGUCGCGG---UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 90148 0.84 0.086672
Target:  5'- aGCCCAGcaGCAGCGGCGCCGCcGCCg -3'
miRNA:   3'- gCGGGUCcaCGUUGUCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 95212 0.84 0.088867
Target:  5'- gGCaCCGGGUGCGacuGCAGCagcgagGCCACGGCCg -3'
miRNA:   3'- gCG-GGUCCACGU---UGUCG------CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 220145 0.84 0.088867
Target:  5'- gGCCCgugaAGGUGaugAACAGCGCCACGGUCa -3'
miRNA:   3'- gCGGG----UCCACg--UUGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 99945 0.82 0.125661
Target:  5'- cCGCaCgCAGGgggGCGGCGGCGCCuCGGCCg -3'
miRNA:   3'- -GCG-G-GUCCa--CGUUGUCGCGGuGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 56453 0.81 0.131631
Target:  5'- gGCCCAGGUccgagagGC-GCcGCGCCACGGCCc -3'
miRNA:   3'- gCGGGUCCA-------CGuUGuCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 101232 0.81 0.14897
Target:  5'- -uUCCuGGUGCcGCGGCGCCACGGCa -3'
miRNA:   3'- gcGGGuCCACGuUGUCGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 209714 0.8 0.15783
Target:  5'- gCGCuCCAGGUccgaggaggucgugcGCAGCGGCaGCCACGGCa -3'
miRNA:   3'- -GCG-GGUCCA---------------CGUUGUCG-CGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 163295 0.8 0.167963
Target:  5'- aCGUCCAGuUGCGACGGCGuguCCACGGUCa -3'
miRNA:   3'- -GCGGGUCcACGUUGUCGC---GGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 104251 0.79 0.17615
Target:  5'- aGCaCCAGGUGCAGCGGCagcuGCCAguCGGCg -3'
miRNA:   3'- gCG-GGUCCACGUUGUCG----CGGU--GCCGg -5'
14588 3' -60.8 NC_003521.1 + 172106 0.79 0.17615
Target:  5'- cCGUgCGGGcgGcCGACGGCGCCACGGUCa -3'
miRNA:   3'- -GCGgGUCCa-C-GUUGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 112757 0.79 0.193594
Target:  5'- aGCCCAuGGgcgGCAucgGCGGCGCguCGGCCa -3'
miRNA:   3'- gCGGGU-CCa--CGU---UGUCGCGguGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 98424 0.79 0.193594
Target:  5'- uGgCCAGG-GCGGCcAGgGCCGCGGCCu -3'
miRNA:   3'- gCgGGUCCaCGUUG-UCgCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 166644 0.79 0.193594
Target:  5'- gCGCgCCGGGcGCcGCGGCGCaGCGGCCa -3'
miRNA:   3'- -GCG-GGUCCaCGuUGUCGCGgUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 167660 0.79 0.197722
Target:  5'- cCGCgCCAGGUcGCAggccgagGCGGCGCCGCcGCCg -3'
miRNA:   3'- -GCG-GGUCCA-CGU-------UGUCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 183899 0.78 0.212532
Target:  5'- gGCCgAGGUGCuggaGGCGGUGCUGCGGCg -3'
miRNA:   3'- gCGGgUCCACG----UUGUCGCGGUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.