miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 68688 0.65 0.831556
Target:  5'- gCGgCCAuGUGCcgcGACgaacucaugaccguGGCGCCGuCGGCCg -3'
miRNA:   3'- -GCgGGUcCACG---UUG--------------UCGCGGU-GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 71314 0.66 0.798908
Target:  5'- aGCaCCuGGgGCGGCGGCGuCCGauacagccgcuucuUGGCCa -3'
miRNA:   3'- gCG-GGuCCaCGUUGUCGC-GGU--------------GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 144102 0.66 0.792963
Target:  5'- uGCCuCA--UGCGGCuGCuggaccGCCGCGGCCu -3'
miRNA:   3'- gCGG-GUccACGUUGuCG------CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 180184 0.66 0.800595
Target:  5'- gCGUCCGGGcuUGCGACAGgagacguagagcaCGCagaaGGCCa -3'
miRNA:   3'- -GCGGGUCC--ACGUUGUC-------------GCGgug-CCGG- -5'
14588 3' -60.8 NC_003521.1 + 59638 0.66 0.78436
Target:  5'- gGCUCGcaggcguuGGUGCGGCAGaCGCUgGCGcGCCu -3'
miRNA:   3'- gCGGGU--------CCACGUUGUC-GCGG-UGC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 202450 0.66 0.792963
Target:  5'- aCGCCCAGGcccUGCuaguGCuggacgagcugGGUGCCGucuuCGGCUa -3'
miRNA:   3'- -GCGGGUCC---ACGu---UG-----------UCGCGGU----GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 233565 0.66 0.78436
Target:  5'- -uCCCAGGUGaCGauccgggaGCAGUGCCggcuucagaACGGCg -3'
miRNA:   3'- gcGGGUCCAC-GU--------UGUCGCGG---------UGCCGg -5'
14588 3' -60.8 NC_003521.1 + 73945 0.66 0.829192
Target:  5'- gCGCCCGcGGacuugauguacgaccUGCGcccGCcGCGCCACcGCCu -3'
miRNA:   3'- -GCGGGU-CC---------------ACGU---UGuCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 40436 0.66 0.792963
Target:  5'- aCGgCCAGGUGCucGCGcGCucuaGCC-CGGUCg -3'
miRNA:   3'- -GCgGGUCCACGu-UGU-CG----CGGuGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 83758 0.66 0.792963
Target:  5'- gGCCUGGGacaggGUGGCGGCGCCccccGCCg -3'
miRNA:   3'- gCGGGUCCa----CGUUGUCGCGGugc-CGG- -5'
14588 3' -60.8 NC_003521.1 + 63212 0.66 0.792963
Target:  5'- cCGUCCGcGGauucCGGCAGCGgaACGGCCg -3'
miRNA:   3'- -GCGGGU-CCac--GUUGUCGCggUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 73636 0.66 0.78436
Target:  5'- aGCCCAa--GCAgaaGGCcuccGCCGCGGCCg -3'
miRNA:   3'- gCGGGUccaCGUug-UCG----CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 75527 0.66 0.78436
Target:  5'- -aUCCAGGaGCugugucaguucAGCGGCGCCGgCGGCg -3'
miRNA:   3'- gcGGGUCCaCG-----------UUGUCGCGGU-GCCGg -5'
14588 3' -60.8 NC_003521.1 + 233797 0.66 0.78436
Target:  5'- gGUCUuucuacGUGCAGCAGCGCCA--GCCc -3'
miRNA:   3'- gCGGGuc----CACGUUGUCGCGGUgcCGG- -5'
14588 3' -60.8 NC_003521.1 + 192306 0.66 0.792963
Target:  5'- cCGUCCGcG-GUAGCGGCGUCGgCGGCa -3'
miRNA:   3'- -GCGGGUcCaCGUUGUCGCGGU-GCCGg -5'
14588 3' -60.8 NC_003521.1 + 91415 0.66 0.78436
Target:  5'- gGCCCacAGG-GCGACcGUGCgCAUGcGCCu -3'
miRNA:   3'- gCGGG--UCCaCGUUGuCGCG-GUGC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 149970 0.66 0.78436
Target:  5'- gGCCguGGU-CAGCAGCaGCacggGCGGCg -3'
miRNA:   3'- gCGGguCCAcGUUGUCG-CGg---UGCCGg -5'
14588 3' -60.8 NC_003521.1 + 217479 0.66 0.783493
Target:  5'- uGCCCAGacacagcaggaacGUGCAGguG-GCCugcAUGGCCa -3'
miRNA:   3'- gCGGGUC-------------CACGUUguCgCGG---UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 138446 0.66 0.801437
Target:  5'- uCGUCCccgcGcGUGCAucgccgGCGGCGCCACaucuGCCa -3'
miRNA:   3'- -GCGGGu---C-CACGU------UGUCGCGGUGc---CGG- -5'
14588 3' -60.8 NC_003521.1 + 34204 0.66 0.78436
Target:  5'- gGCCCaccAGGgcgGCGuagACGGCGCC-CGuGUCg -3'
miRNA:   3'- gCGGG---UCCa--CGU---UGUCGCGGuGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.