miRNA display CGI


Results 21 - 40 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 224161 0.66 0.817158
Target:  5'- cCGuCCCAGGUguugaGCAucucggcccgaaaGCGGuCGCCGCGacagaGCCa -3'
miRNA:   3'- -GC-GGGUCCA-----CGU-------------UGUC-GCGGUGC-----CGG- -5'
14588 3' -60.8 NC_003521.1 + 204129 0.66 0.801437
Target:  5'- uGCUCGGGccagGCGcCGGaGCC-CGGCCu -3'
miRNA:   3'- gCGGGUCCa---CGUuGUCgCGGuGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 153085 0.66 0.807288
Target:  5'- gGCCCGGGccgggGCccaccacgccgccgGGCGcGCGCgACGGCa -3'
miRNA:   3'- gCGGGUCCa----CG--------------UUGU-CGCGgUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 151648 0.66 0.809775
Target:  5'- aCGUCCAGcaggGCca-GGC-CCACGGCCc -3'
miRNA:   3'- -GCGGGUCca--CGuugUCGcGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 55982 0.66 0.809775
Target:  5'- uGUgCAGGgGCcGCAGCcgguCCACGGCg -3'
miRNA:   3'- gCGgGUCCaCGuUGUCGc---GGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 133973 0.66 0.809775
Target:  5'- gCGUCCA--UGC-GCGGacgcugGCCGCGGCCa -3'
miRNA:   3'- -GCGGGUccACGuUGUCg-----CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 71314 0.66 0.798908
Target:  5'- aGCaCCuGGgGCGGCGGCGuCCGauacagccgcuucuUGGCCa -3'
miRNA:   3'- gCG-GGuCCaCGUUGUCGC-GGU--------------GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 238435 0.66 0.809775
Target:  5'- gGUCgAGGUcggGCAGgaGGCGCaggGCGGCCu -3'
miRNA:   3'- gCGGgUCCA---CGUUg-UCGCGg--UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 6375 0.66 0.809775
Target:  5'- gGUCgGGGUcGCGGaggGGCGCCGCaGCUa -3'
miRNA:   3'- gCGGgUCCA-CGUUg--UCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 226607 0.66 0.817158
Target:  5'- aGCCCAGcG-GCGucaggggcucgccGCAGCacaccagcuuGCuCGCGGCCu -3'
miRNA:   3'- gCGGGUC-CaCGU-------------UGUCG----------CG-GUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 4318 0.66 0.801437
Target:  5'- gGCCgGGGgcuCGACcguccaugccuGGCGCCACcGCCg -3'
miRNA:   3'- gCGGgUCCac-GUUG-----------UCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 149970 0.66 0.78436
Target:  5'- gGCCguGGU-CAGCAGCaGCacggGCGGCg -3'
miRNA:   3'- gCGGguCCAcGUUGUCG-CGg---UGCCGg -5'
14588 3' -60.8 NC_003521.1 + 233797 0.66 0.78436
Target:  5'- gGUCUuucuacGUGCAGCAGCGCCA--GCCc -3'
miRNA:   3'- gCGGGuc----CACGUUGUCGCGGUgcCGG- -5'
14588 3' -60.8 NC_003521.1 + 63212 0.66 0.792963
Target:  5'- cCGUCCGcGGauucCGGCAGCGgaACGGCCg -3'
miRNA:   3'- -GCGGGU-CCac--GUUGUCGCggUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 34204 0.66 0.78436
Target:  5'- gGCCCaccAGGgcgGCGuagACGGCGCC-CGuGUCg -3'
miRNA:   3'- gCGGG---UCCa--CGU---UGUCGCGGuGC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 73636 0.66 0.78436
Target:  5'- aGCCCAa--GCAgaaGGCcuccGCCGCGGCCg -3'
miRNA:   3'- gCGGGUccaCGUug-UCG----CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 213852 0.66 0.801437
Target:  5'- gGCCCAGucucgcUGCAG-GGCGuCCAUGGCa -3'
miRNA:   3'- gCGGGUCc-----ACGUUgUCGC-GGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 240639 0.66 0.809775
Target:  5'- uGCCgCGGGcgUGCAGggaGGCcgaaGCgGCGGCCg -3'
miRNA:   3'- gCGG-GUCC--ACGUUg--UCG----CGgUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 148902 0.66 0.809775
Target:  5'- aCGCCgAGGaGCGc---CGCCGCGGCa -3'
miRNA:   3'- -GCGGgUCCaCGUugucGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 112386 0.66 0.809775
Target:  5'- uCGUCCAccuGGcugGCGcAguGCGCCGacCGGCCg -3'
miRNA:   3'- -GCGGGU---CCa--CGU-UguCGCGGU--GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.