miRNA display CGI


Results 1 - 20 of 663 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 90 0.66 0.809775
Target:  5'- uGCCgCGGGcgUGCAGggaGGCcgaaGCgGCGGCCg -3'
miRNA:   3'- gCGG-GUCC--ACGUUg--UCG----CGgUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 1158 0.72 0.44727
Target:  5'- -cCCCGGGaGCcACGGCGCCgccuacgggacuggACGGCCu -3'
miRNA:   3'- gcGGGUCCaCGuUGUCGCGG--------------UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 1284 0.67 0.755152
Target:  5'- cCGCCCGcgacgccgacgaauGGUuccGCuACGGCGCCggcgacguggcGCGGCUg -3'
miRNA:   3'- -GCGGGU--------------CCA---CGuUGUCGCGG-----------UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 1353 0.66 0.801437
Target:  5'- gGCUgGGGcUG-AAC-GCGCCGCgGGCCa -3'
miRNA:   3'- gCGGgUCC-ACgUUGuCGCGGUG-CCGG- -5'
14588 3' -60.8 NC_003521.1 + 2222 0.66 0.792963
Target:  5'- aCGCCCAGGcccUGCuaguGCuggacgagcugGGUGCCGucuuCGGCUa -3'
miRNA:   3'- -GCGGGUCC---ACGu---UG-----------UCGCGGU----GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 2462 0.75 0.304624
Target:  5'- gCGCCCcgcuauGGGUacGCGACGGCGCC--GGCCa -3'
miRNA:   3'- -GCGGG------UCCA--CGUUGUCGCGGugCCGG- -5'
14588 3' -60.8 NC_003521.1 + 2711 0.66 0.78436
Target:  5'- aCGCCaCucGUGCGGgAGCGCCGucaccgccucgcUGGCUg -3'
miRNA:   3'- -GCGG-GucCACGUUgUCGCGGU------------GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 4318 0.66 0.801437
Target:  5'- gGCCgGGGgcuCGACcguccaugccuGGCGCCACcGCCg -3'
miRNA:   3'- gCGGgUCCac-GUUG-----------UCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 5529 0.67 0.775636
Target:  5'- aGCgacGGUGaCGGCAGcCGgCGCGGCCg -3'
miRNA:   3'- gCGgguCCAC-GUUGUC-GCgGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 5732 0.7 0.596914
Target:  5'- gGCCCGGGcaCGGCGcGUGUCAUGGUCa -3'
miRNA:   3'- gCGGGUCCacGUUGU-CGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 6083 0.78 0.217509
Target:  5'- aCGgCC-GGUGCGGCGGCguuccGCCACGGCUa -3'
miRNA:   3'- -GCgGGuCCACGUUGUCG-----CGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 6375 0.66 0.809775
Target:  5'- gGUCgGGGUcGCGGaggGGCGCCGCaGCUa -3'
miRNA:   3'- gCGGgUCCA-CGUUg--UCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 6721 0.67 0.756955
Target:  5'- uCGCCguGGUGCAGggccugacgcagcCAGCGCUc--GCCg -3'
miRNA:   3'- -GCGGguCCACGUU-------------GUCGCGGugcCGG- -5'
14588 3' -60.8 NC_003521.1 + 7071 0.68 0.67385
Target:  5'- uGCCCccGGUGagaagaAGCAGaCGCgGCGGCg -3'
miRNA:   3'- gCGGGu-CCACg-----UUGUC-GCGgUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 7953 0.68 0.692921
Target:  5'- -cUCCAGaucGCcGCGGUGUCGCGGCCg -3'
miRNA:   3'- gcGGGUCca-CGuUGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 8430 0.68 0.692921
Target:  5'- uGCCgCAGGcGCAGcCAGCGCgagACGGUg -3'
miRNA:   3'- gCGG-GUCCaCGUU-GUCGCGg--UGCCGg -5'
14588 3' -60.8 NC_003521.1 + 13458 0.66 0.809775
Target:  5'- aGCgCAGcG-GCggUAGCGCCgucgACGGUCu -3'
miRNA:   3'- gCGgGUC-CaCGuuGUCGCGG----UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 13986 0.69 0.664265
Target:  5'- uGCCC-GGcGCGGCGGCGggcgaggaccCCAUGGCg -3'
miRNA:   3'- gCGGGuCCaCGUUGUCGC----------GGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 14155 0.66 0.817971
Target:  5'- gCGCCUAGaG-GaCGAgaucaucguCAGCGCCAagaaGGCCg -3'
miRNA:   3'- -GCGGGUC-CaC-GUU---------GUCGCGGUg---CCGG- -5'
14588 3' -60.8 NC_003521.1 + 14424 0.68 0.711812
Target:  5'- uCGCCUAucgugacguGGUGCAcACGGCcCUGCGGCg -3'
miRNA:   3'- -GCGGGU---------CCACGU-UGUCGcGGUGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.