miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 240639 0.66 0.809775
Target:  5'- uGCCgCGGGcgUGCAGggaGGCcgaaGCgGCGGCCg -3'
miRNA:   3'- gCGG-GUCC--ACGUUg--UCG----CGgUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 239653 0.66 0.801437
Target:  5'- nCGUCCAGucccGUAgGCGGCGCCGUGGCUc -3'
miRNA:   3'- -GCGGGUCca--CGU-UGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 239614 0.69 0.654658
Target:  5'- aCGCCCAGGgccaGguACAGCugguccuguuGgCACaGGCCg -3'
miRNA:   3'- -GCGGGUCCa---CguUGUCG----------CgGUG-CCGG- -5'
14588 3' -60.8 NC_003521.1 + 239453 0.69 0.625767
Target:  5'- gGCUCGGG-GaCAGCGGUGgcCCGCGGCg -3'
miRNA:   3'- gCGGGUCCaC-GUUGUCGC--GGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 239370 0.72 0.448989
Target:  5'- uGCCCGuGUGCugccaccGGCGGCGCagcuCGCGGCCc -3'
miRNA:   3'- gCGGGUcCACG-------UUGUCGCG----GUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 238598 0.67 0.739679
Target:  5'- uCGUCCAGcacUAGCAGgGCCugGGCg -3'
miRNA:   3'- -GCGGGUCcacGUUGUCgCGGugCCGg -5'
14588 3' -60.8 NC_003521.1 + 238518 0.69 0.635402
Target:  5'- gCGCgagCAGGUGCGAgAGCuCguCGGCCa -3'
miRNA:   3'- -GCGg--GUCCACGUUgUCGcGguGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 238489 0.75 0.32497
Target:  5'- gGCCCAGG-GuCAGCAGCcCCAggaGGCCg -3'
miRNA:   3'- gCGGGUCCaC-GUUGUCGcGGUg--CCGG- -5'
14588 3' -60.8 NC_003521.1 + 238435 0.66 0.809775
Target:  5'- gGUCgAGGUcggGCAGgaGGCGCaggGCGGCCu -3'
miRNA:   3'- gCGGgUCCA---CGUUg-UCGCGg--UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 237172 0.66 0.78436
Target:  5'- cCGCCgAGGca-GACGGCG--GCGGCCg -3'
miRNA:   3'- -GCGGgUCCacgUUGUCGCggUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 235199 0.69 0.616137
Target:  5'- aCGCCCuguGGUGCGACuGCGaCGagUGGCa -3'
miRNA:   3'- -GCGGGu--CCACGUUGuCGCgGU--GCCGg -5'
14588 3' -60.8 NC_003521.1 + 233797 0.66 0.78436
Target:  5'- gGUCUuucuacGUGCAGCAGCGCCA--GCCc -3'
miRNA:   3'- gCGGGuc----CACGUUGUCGCGGUgcCGG- -5'
14588 3' -60.8 NC_003521.1 + 233565 0.66 0.78436
Target:  5'- -uCCCAGGUGaCGauccgggaGCAGUGCCggcuucagaACGGCg -3'
miRNA:   3'- gcGGGUCCAC-GU--------UGUCGCGG---------UGCCGg -5'
14588 3' -60.8 NC_003521.1 + 233376 0.67 0.766798
Target:  5'- aCGUCCcgcguGGUGCugu-GCGCCGCGuCCg -3'
miRNA:   3'- -GCGGGu----CCACGuuguCGCGGUGCcGG- -5'
14588 3' -60.8 NC_003521.1 + 232337 0.68 0.683404
Target:  5'- aGCCUccgAGGaGCAguaGCAGCaGUCGCGGCg -3'
miRNA:   3'- gCGGG---UCCaCGU---UGUCG-CGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 228971 0.68 0.711812
Target:  5'- uCGUCCgaggAGGUGCGcggGCGGCGCaggacCGGCa -3'
miRNA:   3'- -GCGGG----UCCACGU---UGUCGCGgu---GCCGg -5'
14588 3' -60.8 NC_003521.1 + 228784 0.69 0.645034
Target:  5'- -cUCCAGGUGCAACAG-GCCgugACGuGCg -3'
miRNA:   3'- gcGGGUCCACGUUGUCgCGG---UGC-CGg -5'
14588 3' -60.8 NC_003521.1 + 228263 0.66 0.817971
Target:  5'- aCGCCCGGGcaucuccagacGCu-CGGCGuccuCCACGGCg -3'
miRNA:   3'- -GCGGGUCCa----------CGuuGUCGC----GGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 227905 0.69 0.645034
Target:  5'- gGCCCuGGUcccGCcacCAGCGCCA-GGCUg -3'
miRNA:   3'- gCGGGuCCA---CGuu-GUCGCGGUgCCGG- -5'
14588 3' -60.8 NC_003521.1 + 227354 0.74 0.384059
Target:  5'- uCGCCCAGaccGU-CGACGGCGCUACcGCCg -3'
miRNA:   3'- -GCGGGUC---CAcGUUGUCGCGGUGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.