miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 103444 0.76 0.29161
Target:  5'- cCG-CCAGGUcGCGGCGguugcGCGCCACGGCg -3'
miRNA:   3'- -GCgGGUCCA-CGUUGU-----CGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 206172 0.77 0.25519
Target:  5'- aGCCCAGGaGCAG-GGCgGCCAgGGCCg -3'
miRNA:   3'- gCGGGUCCaCGUUgUCG-CGGUgCCGG- -5'
14588 3' -60.8 NC_003521.1 + 215444 0.77 0.25519
Target:  5'- aGCCgCGGGUGCu--GGCGCCA-GGCCg -3'
miRNA:   3'- gCGG-GUCCACGuugUCGCGGUgCCGG- -5'
14588 3' -60.8 NC_003521.1 + 115983 0.77 0.257498
Target:  5'- aCGCCCAGGUuguucauggucucgcGCAggaGCAGCGUCuccaGGCCg -3'
miRNA:   3'- -GCGGGUCCA---------------CGU---UGUCGCGGug--CCGG- -5'
14588 3' -60.8 NC_003521.1 + 168417 0.77 0.260991
Target:  5'- uGgCUAGGgcggGCGGCAGgGCCGCGGCg -3'
miRNA:   3'- gCgGGUCCa---CGUUGUCgCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 111178 0.77 0.260991
Target:  5'- cCGCCCcg--GCGACGGCGCCGCGGaCg -3'
miRNA:   3'- -GCGGGuccaCGUUGUCGCGGUGCCgG- -5'
14588 3' -60.8 NC_003521.1 + 142327 0.76 0.278419
Target:  5'- uCGCaaCUGGGUGCGcgaggccgccgccACGGcCGCCGCGGCCg -3'
miRNA:   3'- -GCG--GGUCCACGU-------------UGUC-GCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 115376 0.76 0.283388
Target:  5'- uGgCCAGGgccgGCAugugcagggcgcggGCGGcCGCCACGGCCu -3'
miRNA:   3'- gCgGGUCCa---CGU--------------UGUC-GCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 75779 0.76 0.29161
Target:  5'- cCGCcuCCAGGUGCAGa--CGCCGCGGCa -3'
miRNA:   3'- -GCG--GGUCCACGUUgucGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 219070 0.77 0.249496
Target:  5'- gCGCCCAGGUGCAugaGCAGCGagaCCuguuCGGgCa -3'
miRNA:   3'- -GCGGGUCCACGU---UGUCGC---GGu---GCCgG- -5'
14588 3' -60.8 NC_003521.1 + 152552 0.78 0.227763
Target:  5'- uGCUCAGGUaCGGCAGCGUCACGcGCUc -3'
miRNA:   3'- gCGGGUCCAcGUUGUCGCGGUGC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 214401 0.78 0.222585
Target:  5'- gCGCCCAGGUGagAAUGGCGCUagagACGGCg -3'
miRNA:   3'- -GCGGGUCCACg-UUGUCGCGG----UGCCGg -5'
14588 3' -60.8 NC_003521.1 + 99621 0.88 0.049678
Target:  5'- gCGCCCGGcG-GC-GCAGCGCCACGGCCa -3'
miRNA:   3'- -GCGGGUC-CaCGuUGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 74161 0.87 0.056429
Target:  5'- gGCCCAGGUGCcgcuggccGACuGCGCCGCGGCg -3'
miRNA:   3'- gCGGGUCCACG--------UUGuCGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 70744 0.86 0.064066
Target:  5'- uCGUCCAGcUGCAGC-GCGCCGCGGCCg -3'
miRNA:   3'- -GCGGGUCcACGUUGuCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 164426 0.85 0.082437
Target:  5'- cCGCCgCuGGUGCuAGCAGCGCCaccGCGGCCg -3'
miRNA:   3'- -GCGG-GuCCACG-UUGUCGCGG---UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 220145 0.84 0.088867
Target:  5'- gGCCCgugaAGGUGaugAACAGCGCCACGGUCa -3'
miRNA:   3'- gCGGG----UCCACg--UUGUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 56453 0.81 0.131631
Target:  5'- gGCCCAGGUccgagagGC-GCcGCGCCACGGCCc -3'
miRNA:   3'- gCGGGUCCA-------CGuUGuCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 209714 0.8 0.15783
Target:  5'- gCGCuCCAGGUccgaggaggucgugcGCAGCGGCaGCCACGGCa -3'
miRNA:   3'- -GCG-GGUCCA---------------CGUUGUCG-CGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 6083 0.78 0.217509
Target:  5'- aCGgCC-GGUGCGGCGGCguuccGCCACGGCUa -3'
miRNA:   3'- -GCgGGuCCACGUUGUCG-----CGGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.