Results 1 - 20 of 663 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14588 | 3' | -60.8 | NC_003521.1 | + | 90148 | 0.84 | 0.086672 |
Target: 5'- aGCCCAGcaGCAGCGGCGCCGCcGCCg -3' miRNA: 3'- gCGGGUCcaCGUUGUCGCGGUGcCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 110901 | 0.76 | 0.279037 |
Target: 5'- uCGgCCAGGUGUucgcGCAGCagGCgCGCGGCCg -3' miRNA: 3'- -GCgGGUCCACGu---UGUCG--CG-GUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 110519 | 0.76 | 0.285269 |
Target: 5'- gGaCCUGGaUGC-GCGGCGCCGCGGCCu -3' miRNA: 3'- gC-GGGUCcACGuUGUCGCGGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 73945 | 0.66 | 0.829192 |
Target: 5'- gCGCCCGcGGacuugauguacgaccUGCGcccGCcGCGCCACcGCCu -3' miRNA: 3'- -GCGGGU-CC---------------ACGU---UGuCGCGGUGcCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 163295 | 0.8 | 0.167963 |
Target: 5'- aCGUCCAGuUGCGACGGCGuguCCACGGUCa -3' miRNA: 3'- -GCGGGUCcACGUUGUCGC---GGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 104251 | 0.79 | 0.17615 |
Target: 5'- aGCaCCAGGUGCAGCGGCagcuGCCAguCGGCg -3' miRNA: 3'- gCG-GGUCCACGUUGUCG----CGGU--GCCGg -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 98424 | 0.79 | 0.193594 |
Target: 5'- uGgCCAGG-GCGGCcAGgGCCGCGGCCu -3' miRNA: 3'- gCgGGUCCaCGUUG-UCgCGGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 112757 | 0.79 | 0.193594 |
Target: 5'- aGCCCAuGGgcgGCAucgGCGGCGCguCGGCCa -3' miRNA: 3'- gCGGGU-CCa--CGU---UGUCGCGguGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 183899 | 0.78 | 0.212532 |
Target: 5'- gGCCgAGGUGCuggaGGCGGUGCUGCGGCg -3' miRNA: 3'- gCGGgUCCACG----UUGUCGCGGUGCCGg -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 197249 | 0.77 | 0.260991 |
Target: 5'- cCGCCCGaggagcGGUGCuugacGCGGCGCCGgCGGCg -3' miRNA: 3'- -GCGGGU------CCACGu----UGUCGCGGU-GCCGg -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 169521 | 0.78 | 0.227763 |
Target: 5'- cCGcCCCAGGUGCuggugccccaggGGCccGUGCCGCGGCCc -3' miRNA: 3'- -GC-GGGUCCACG------------UUGu-CGCGGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 167660 | 0.79 | 0.197722 |
Target: 5'- cCGCgCCAGGUcGCAggccgagGCGGCGCCGCcGCCg -3' miRNA: 3'- -GCG-GGUCCA-CGU-------UGUCGCGGUGcCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 95212 | 0.84 | 0.088867 |
Target: 5'- gGCaCCGGGUGCGacuGCAGCagcgagGCCACGGCCg -3' miRNA: 3'- gCG-GGUCCACGU---UGUCG------CGGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 17006 | 0.77 | 0.238422 |
Target: 5'- gCGCCCGcGGUgGCGGCGGCGCa--GGCCc -3' miRNA: 3'- -GCGGGU-CCA-CGUUGUCGCGgugCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 99945 | 0.82 | 0.125661 |
Target: 5'- cCGCaCgCAGGgggGCGGCGGCGCCuCGGCCg -3' miRNA: 3'- -GCG-G-GUCCa--CGUUGUCGCGGuGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 166644 | 0.79 | 0.193594 |
Target: 5'- gCGCgCCGGGcGCcGCGGCGCaGCGGCCa -3' miRNA: 3'- -GCG-GGUCCaCGuUGUCGCGgUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 207134 | 0.77 | 0.260991 |
Target: 5'- aGUCCAGcUGCAGCGuuacgugcGgGCCACGGCCg -3' miRNA: 3'- gCGGGUCcACGUUGU--------CgCGGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 191698 | 0.76 | 0.279037 |
Target: 5'- aGUCCccGcaGCAGCGGCGCCGCGGUCa -3' miRNA: 3'- gCGGGucCa-CGUUGUCGCGGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 101232 | 0.81 | 0.14897 |
Target: 5'- -uUCCuGGUGCcGCGGCGCCACGGCa -3' miRNA: 3'- gcGGGuCCACGuUGUCGCGGUGCCGg -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 172106 | 0.79 | 0.17615 |
Target: 5'- cCGUgCGGGcgGcCGACGGCGCCACGGUCa -3' miRNA: 3'- -GCGgGUCCa-C-GUUGUCGCGGUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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