Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14589 | 3' | -61.8 | NC_003521.1 | + | 151603 | 0.66 | 0.793688 |
Target: 5'- cGCUgGagguCGGcCGGUGUCCCCGGuuaGCa- -3' miRNA: 3'- -CGAgC----GCC-GCCACAGGGGCCuc-UGca -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 164944 | 0.66 | 0.801992 |
Target: 5'- cCUC-CGGCGGcucgcGUCgCCGGAGAgGg -3' miRNA: 3'- cGAGcGCCGCCa----CAGgGGCCUCUgCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 91878 | 0.66 | 0.801992 |
Target: 5'- gGCg-GCGGCGGUGcgaCCaCGGAcgGACGg -3' miRNA: 3'- -CGagCGCCGCCACag-GG-GCCU--CUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 124257 | 0.66 | 0.810165 |
Target: 5'- cGCcgCGCGGCaugcuuGGUGUCUgCGGGcGCGa -3' miRNA: 3'- -CGa-GCGCCG------CCACAGGgGCCUcUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 183129 | 0.66 | 0.810165 |
Target: 5'- cGgUUGCGGCGGUcgcaUCCCCGuGcAGACc- -3' miRNA: 3'- -CgAGCGCCGCCAc---AGGGGC-C-UCUGca -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 155094 | 0.66 | 0.813396 |
Target: 5'- aGUUCGCGGCGcugcaggagcagggcGUGgaggacuucUCCCUGGAGAa-- -3' miRNA: 3'- -CGAGCGCCGC---------------CAC---------AGGGGCCUCUgca -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 129198 | 0.66 | 0.8182 |
Target: 5'- uUUCGcCGGCGGUucgaccucGUCgCCGcGGGGCGa -3' miRNA: 3'- cGAGC-GCCGCCA--------CAGgGGC-CUCUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 152380 | 0.66 | 0.8182 |
Target: 5'- cGC-CGaGGCGGacgacgucUCCCUGGAGACGc -3' miRNA: 3'- -CGaGCgCCGCCac------AGGGGCCUCUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 181031 | 0.66 | 0.8182 |
Target: 5'- cGC-CGUGuCGGUGUCCUugCGGaAGGCGg -3' miRNA: 3'- -CGaGCGCcGCCACAGGG--GCC-UCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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