Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14589 | 3' | -61.8 | NC_003521.1 | + | 60691 | 0.68 | 0.695699 |
Target: 5'- gGCcgCGCGGgGGa---CCCGGGGGCGg -3' miRNA: 3'- -CGa-GCGCCgCCacagGGGCCUCUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 49907 | 0.68 | 0.7022 |
Target: 5'- cGCUaCGUaagaaaggagagggGGCGGcagcuUCCCCGGGGACGc -3' miRNA: 3'- -CGA-GCG--------------CCGCCac---AGGGGCCUCUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 50540 | 0.68 | 0.704978 |
Target: 5'- gGUUCGCGGCaGUaUCgCaggCGGAGACGUg -3' miRNA: 3'- -CGAGCGCCGcCAcAG-Gg--GCCUCUGCA- -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 74906 | 0.67 | 0.713285 |
Target: 5'- cGgUgGCGGCGGUGgagucggCCCggcagcgCGGGGugGUg -3' miRNA: 3'- -CgAgCGCCGCCACa------GGG-------GCCUCugCA- -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 135753 | 0.67 | 0.714205 |
Target: 5'- uGgUgGCGGCGGUGggaucgCCCCuGGGGCu- -3' miRNA: 3'- -CgAgCGCCGCCACa-----GGGGcCUCUGca -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 38308 | 0.67 | 0.732472 |
Target: 5'- aGCUCGuCGGCcagcggguagaGGUGgccgUCCUGGGGGCa- -3' miRNA: 3'- -CGAGC-GCCG-----------CCACa---GGGGCCUCUGca -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 238535 | 0.67 | 0.732472 |
Target: 5'- aGCUCGuCGGCcagcggguagaGGUGgccgUCCUGGGGGCa- -3' miRNA: 3'- -CGAGC-GCCG-----------CCACa---GGGGCCUCUGca -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 123689 | 0.67 | 0.741498 |
Target: 5'- uGCggCGUGGCGGUGgaagaGGAGGCGg -3' miRNA: 3'- -CGa-GCGCCGCCACaggggCCUCUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 122535 | 0.67 | 0.741498 |
Target: 5'- -gUUGCGGCGGcGUCCCUaGAGGuCGc -3' miRNA: 3'- cgAGCGCCGCCaCAGGGGcCUCU-GCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 84831 | 0.67 | 0.758416 |
Target: 5'- aGCUCGCgcagcgccuccucGGUGGUGUagggGGAGACGUa -3' miRNA: 3'- -CGAGCG-------------CCGCCACAggggCCUCUGCA- -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 120543 | 0.67 | 0.759297 |
Target: 5'- cCUCgGCGGcCGGcgGUCCCgGGGGAgCGc -3' miRNA: 3'- cGAG-CGCC-GCCa-CAGGGgCCUCU-GCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 37552 | 0.67 | 0.759297 |
Target: 5'- gGgUCGCGGCGGaaucUCCUCGuAGAUGUg -3' miRNA: 3'- -CgAGCGCCGCCac--AGGGGCcUCUGCA- -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 136874 | 0.66 | 0.768057 |
Target: 5'- aCUCGCGGCGGguggcgccggUGUUCgCGGucgacaacGACGUg -3' miRNA: 3'- cGAGCGCCGCC----------ACAGGgGCCu-------CUGCA- -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 125843 | 0.66 | 0.768057 |
Target: 5'- gGCUCGCGGUGGUcGUacagcgCCuuGGuGGCc- -3' miRNA: 3'- -CGAGCGCCGCCA-CA------GGggCCuCUGca -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 113574 | 0.66 | 0.768057 |
Target: 5'- aGgaCGCGGUGGggcugGgCCUCGGGGGCa- -3' miRNA: 3'- -CgaGCGCCGCCa----CaGGGGCCUCUGca -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 115917 | 0.66 | 0.768057 |
Target: 5'- aGCUCGCGGUagaGGUGaggCCaguaCGGuugGGGCGUc -3' miRNA: 3'- -CGAGCGCCG---CCACa--GGg---GCC---UCUGCA- -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 87973 | 0.66 | 0.776713 |
Target: 5'- cCUCGCGGCgcgaggacucGGUGaaUCUGGGGGCGc -3' miRNA: 3'- cGAGCGCCG----------CCACagGGGCCUCUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 165043 | 0.66 | 0.776713 |
Target: 5'- uGC-CGCGGCGucugCaCCUGGAGGCGg -3' miRNA: 3'- -CGaGCGCCGCcacaG-GGGCCUCUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 33453 | 0.66 | 0.780145 |
Target: 5'- gGCUCGCGcuguucuCGGUGUCggccggccgcgccgaCCCGaGGGACGc -3' miRNA: 3'- -CGAGCGCc------GCCACAG---------------GGGC-CUCUGCa -5' |
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14589 | 3' | -61.8 | NC_003521.1 | + | 167680 | 0.66 | 0.785259 |
Target: 5'- uGCUCGCGGUugcGGUGacgacgCUCguggaGGAGGCGg -3' miRNA: 3'- -CGAGCGCCG---CCACa-----GGGg----CCUCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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