miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 3' -61.8 NC_003521.1 + 211581 1.08 0.001978
Target:  5'- cGCUCGCGGCGGUGUCCCCGGAGACGUc -3'
miRNA:   3'- -CGAGCGCCGCCACAGGGGCCUCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 37451 0.78 0.219758
Target:  5'- gGCgacCGCGGCGGUuUCUgCGGAGGCGUg -3'
miRNA:   3'- -CGa--GCGCCGCCAcAGGgGCCUCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 72991 0.77 0.224781
Target:  5'- aGCcCGCGGCGGUcGUgCCCGGGGGgGUc -3'
miRNA:   3'- -CGaGCGCCGCCA-CAgGGGCCUCUgCA- -5'
14589 3' -61.8 NC_003521.1 + 18472 0.75 0.332583
Target:  5'- gGCUgCGCGGCGaGUGUCgCCUGGAGGa-- -3'
miRNA:   3'- -CGA-GCGCCGC-CACAG-GGGCCUCUgca -5'
14589 3' -61.8 NC_003521.1 + 50811 0.74 0.361167
Target:  5'- -aUgGCaGCGGUGUCCCCGGuGGugGg -3'
miRNA:   3'- cgAgCGcCGCCACAGGGGCC-UCugCa -5'
14589 3' -61.8 NC_003521.1 + 164785 0.73 0.3837
Target:  5'- --aCGCGGCGGgcacggGUCgUCGGGGACGa -3'
miRNA:   3'- cgaGCGCCGCCa-----CAGgGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 94072 0.7 0.545553
Target:  5'- ---aGCGGCGuGUcugaGUCaCCCGGAGGCGa -3'
miRNA:   3'- cgagCGCCGC-CA----CAG-GGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 92027 0.7 0.545553
Target:  5'- gGCg-GCGGCGGUggguccggggGUCCCCGGGGugccuccCGUa -3'
miRNA:   3'- -CGagCGCCGCCA----------CAGGGGCCUCu------GCA- -5'
14589 3' -61.8 NC_003521.1 + 239664 0.7 0.592127
Target:  5'- cGUagGCGGCGccGUGgCuCCCGGGGACGg -3'
miRNA:   3'- -CGagCGCCGC--CACaG-GGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 39437 0.7 0.592127
Target:  5'- cGUagGCGGCGccGUGgCuCCCGGGGACGg -3'
miRNA:   3'- -CGagCGCCGC--CACaG-GGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 186653 0.69 0.610968
Target:  5'- cGUcgCGCGGCGGUGg---CGGAGGCGg -3'
miRNA:   3'- -CGa-GCGCCGCCACagggGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 186518 0.69 0.620411
Target:  5'- uCUCG-GGCGGUGUCgCCagCGGGGGCu- -3'
miRNA:   3'- cGAGCgCCGCCACAG-GG--GCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 160394 0.69 0.620411
Target:  5'- gGCUCGCGuucGCGu--UCCCCGGuGACGa -3'
miRNA:   3'- -CGAGCGC---CGCcacAGGGGCCuCUGCa -5'
14589 3' -61.8 NC_003521.1 + 131089 0.69 0.639315
Target:  5'- gGCUCGC-GCGGg--CUCCGGAcGGCGg -3'
miRNA:   3'- -CGAGCGcCGCCacaGGGGCCU-CUGCa -5'
14589 3' -61.8 NC_003521.1 + 36425 0.69 0.639315
Target:  5'- uUUCGCGGuCGGaGggCCgCGGAGACGa -3'
miRNA:   3'- cGAGCGCC-GCCaCa-GGgGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 154039 0.68 0.658199
Target:  5'- cGUaCGCGGUGGUG-CCCaUGGAGAUc- -3'
miRNA:   3'- -CGaGCGCCGCCACaGGG-GCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 7970 0.68 0.667618
Target:  5'- -gUCGCGGcCGGgaggGUCCgCGGcGGCGg -3'
miRNA:   3'- cgAGCGCC-GCCa---CAGGgGCCuCUGCa -5'
14589 3' -61.8 NC_003521.1 + 92659 0.68 0.667618
Target:  5'- uGCUaCGCGGUuuuuaugcagcuGGUGUUCCUGGcgguGACGg -3'
miRNA:   3'- -CGA-GCGCCG------------CCACAGGGGCCu---CUGCa -5'
14589 3' -61.8 NC_003521.1 + 56800 0.68 0.686375
Target:  5'- gGCUCGCGaCGGca-CCUCGGGGugGg -3'
miRNA:   3'- -CGAGCGCcGCCacaGGGGCCUCugCa -5'
14589 3' -61.8 NC_003521.1 + 125408 0.68 0.686375
Target:  5'- cGC-CGCGGCGcUGagUCCGGAGGcCGUg -3'
miRNA:   3'- -CGaGCGCCGCcACagGGGCCUCU-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.