miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 3' -61.8 NC_003521.1 + 211581 1.08 0.001978
Target:  5'- cGCUCGCGGCGGUGUCCCCGGAGACGUc -3'
miRNA:   3'- -CGAGCGCCGCCACAGGGGCCUCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 122535 0.67 0.741498
Target:  5'- -gUUGCGGCGGcGUCCCUaGAGGuCGc -3'
miRNA:   3'- cgAGCGCCGCCaCAGGGGcCUCU-GCa -5'
14589 3' -61.8 NC_003521.1 + 113574 0.66 0.768057
Target:  5'- aGgaCGCGGUGGggcugGgCCUCGGGGGCa- -3'
miRNA:   3'- -CgaGCGCCGCCa----CaGGGGCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 115917 0.66 0.768057
Target:  5'- aGCUCGCGGUagaGGUGaggCCaguaCGGuugGGGCGUc -3'
miRNA:   3'- -CGAGCGCCG---CCACa--GGg---GCC---UCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 125843 0.66 0.768057
Target:  5'- gGCUCGCGGUGGUcGUacagcgCCuuGGuGGCc- -3'
miRNA:   3'- -CGAGCGCCGCCA-CA------GGggCCuCUGca -5'
14589 3' -61.8 NC_003521.1 + 167680 0.66 0.785259
Target:  5'- uGCUCGCGGUugcGGUGacgacgCUCguggaGGAGGCGg -3'
miRNA:   3'- -CGAGCGCCG---CCACa-----GGGg----CCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 91878 0.66 0.801992
Target:  5'- gGCg-GCGGCGGUGcgaCCaCGGAcgGACGg -3'
miRNA:   3'- -CGagCGCCGCCACag-GG-GCCU--CUGCa -5'
14589 3' -61.8 NC_003521.1 + 164944 0.66 0.801992
Target:  5'- cCUC-CGGCGGcucgcGUCgCCGGAGAgGg -3'
miRNA:   3'- cGAGcGCCGCCa----CAGgGGCCUCUgCa -5'
14589 3' -61.8 NC_003521.1 + 124257 0.66 0.810165
Target:  5'- cGCcgCGCGGCaugcuuGGUGUCUgCGGGcGCGa -3'
miRNA:   3'- -CGa-GCGCCG------CCACAGGgGCCUcUGCa -5'
14589 3' -61.8 NC_003521.1 + 238535 0.67 0.732472
Target:  5'- aGCUCGuCGGCcagcggguagaGGUGgccgUCCUGGGGGCa- -3'
miRNA:   3'- -CGAGC-GCCG-----------CCACa---GGGGCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 60691 0.68 0.695699
Target:  5'- gGCcgCGCGGgGGa---CCCGGGGGCGg -3'
miRNA:   3'- -CGa-GCGCCgCCacagGGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 72991 0.77 0.224781
Target:  5'- aGCcCGCGGCGGUcGUgCCCGGGGGgGUc -3'
miRNA:   3'- -CGaGCGCCGCCA-CAgGGGCCUCUgCA- -5'
14589 3' -61.8 NC_003521.1 + 164785 0.73 0.3837
Target:  5'- --aCGCGGCGGgcacggGUCgUCGGGGACGa -3'
miRNA:   3'- cgaGCGCCGCCa-----CAGgGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 94072 0.7 0.545553
Target:  5'- ---aGCGGCGuGUcugaGUCaCCCGGAGGCGa -3'
miRNA:   3'- cgagCGCCGC-CA----CAG-GGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 92027 0.7 0.545553
Target:  5'- gGCg-GCGGCGGUggguccggggGUCCCCGGGGugccuccCGUa -3'
miRNA:   3'- -CGagCGCCGCCA----------CAGGGGCCUCu------GCA- -5'
14589 3' -61.8 NC_003521.1 + 239664 0.7 0.592127
Target:  5'- cGUagGCGGCGccGUGgCuCCCGGGGACGg -3'
miRNA:   3'- -CGagCGCCGC--CACaG-GGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 160394 0.69 0.620411
Target:  5'- gGCUCGCGuucGCGu--UCCCCGGuGACGa -3'
miRNA:   3'- -CGAGCGC---CGCcacAGGGGCCuCUGCa -5'
14589 3' -61.8 NC_003521.1 + 186518 0.69 0.620411
Target:  5'- uCUCG-GGCGGUGUCgCCagCGGGGGCu- -3'
miRNA:   3'- cGAGCgCCGCCACAG-GG--GCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 131089 0.69 0.639315
Target:  5'- gGCUCGC-GCGGg--CUCCGGAcGGCGg -3'
miRNA:   3'- -CGAGCGcCGCCacaGGGGCCU-CUGCa -5'
14589 3' -61.8 NC_003521.1 + 181031 0.66 0.8182
Target:  5'- cGC-CGUGuCGGUGUCCUugCGGaAGGCGg -3'
miRNA:   3'- -CGaGCGCcGCCACAGGG--GCC-UCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.