miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 3' -61.8 NC_003521.1 + 74906 0.67 0.713285
Target:  5'- cGgUgGCGGCGGUGgagucggCCCggcagcgCGGGGugGUg -3'
miRNA:   3'- -CgAgCGCCGCCACa------GGG-------GCCUCugCA- -5'
14589 3' -61.8 NC_003521.1 + 135753 0.67 0.714205
Target:  5'- uGgUgGCGGCGGUGggaucgCCCCuGGGGCu- -3'
miRNA:   3'- -CgAgCGCCGCCACa-----GGGGcCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 38308 0.67 0.732472
Target:  5'- aGCUCGuCGGCcagcggguagaGGUGgccgUCCUGGGGGCa- -3'
miRNA:   3'- -CGAGC-GCCG-----------CCACa---GGGGCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 123689 0.67 0.741498
Target:  5'- uGCggCGUGGCGGUGgaagaGGAGGCGg -3'
miRNA:   3'- -CGa-GCGCCGCCACaggggCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 84831 0.67 0.758416
Target:  5'- aGCUCGCgcagcgccuccucGGUGGUGUagggGGAGACGUa -3'
miRNA:   3'- -CGAGCG-------------CCGCCACAggggCCUCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 37552 0.67 0.759297
Target:  5'- gGgUCGCGGCGGaaucUCCUCGuAGAUGUg -3'
miRNA:   3'- -CgAGCGCCGCCac--AGGGGCcUCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 120543 0.67 0.759297
Target:  5'- cCUCgGCGGcCGGcgGUCCCgGGGGAgCGc -3'
miRNA:   3'- cGAG-CGCC-GCCa-CAGGGgCCUCU-GCa -5'
14589 3' -61.8 NC_003521.1 + 136874 0.66 0.768057
Target:  5'- aCUCGCGGCGGguggcgccggUGUUCgCGGucgacaacGACGUg -3'
miRNA:   3'- cGAGCGCCGCC----------ACAGGgGCCu-------CUGCA- -5'
14589 3' -61.8 NC_003521.1 + 87973 0.66 0.776713
Target:  5'- cCUCGCGGCgcgaggacucGGUGaaUCUGGGGGCGc -3'
miRNA:   3'- cGAGCGCCG----------CCACagGGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 49907 0.68 0.7022
Target:  5'- cGCUaCGUaagaaaggagagggGGCGGcagcuUCCCCGGGGACGc -3'
miRNA:   3'- -CGA-GCG--------------CCGCCac---AGGGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 125408 0.68 0.686375
Target:  5'- cGC-CGCGGCGcUGagUCCGGAGGcCGUg -3'
miRNA:   3'- -CGaGCGCCGCcACagGGGCCUCU-GCA- -5'
14589 3' -61.8 NC_003521.1 + 18472 0.75 0.332583
Target:  5'- gGCUgCGCGGCGaGUGUCgCCUGGAGGa-- -3'
miRNA:   3'- -CGA-GCGCCGC-CACAG-GGGCCUCUgca -5'
14589 3' -61.8 NC_003521.1 + 50811 0.74 0.361167
Target:  5'- -aUgGCaGCGGUGUCCCCGGuGGugGg -3'
miRNA:   3'- cgAgCGcCGCCACAGGGGCC-UCugCa -5'
14589 3' -61.8 NC_003521.1 + 39437 0.7 0.592127
Target:  5'- cGUagGCGGCGccGUGgCuCCCGGGGACGg -3'
miRNA:   3'- -CGagCGCCGC--CACaG-GGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 186653 0.69 0.610968
Target:  5'- cGUcgCGCGGCGGUGg---CGGAGGCGg -3'
miRNA:   3'- -CGa-GCGCCGCCACagggGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 36425 0.69 0.639315
Target:  5'- uUUCGCGGuCGGaGggCCgCGGAGACGa -3'
miRNA:   3'- cGAGCGCC-GCCaCa-GGgGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 154039 0.68 0.658199
Target:  5'- cGUaCGCGGUGGUG-CCCaUGGAGAUc- -3'
miRNA:   3'- -CGaGCGCCGCCACaGGG-GCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 92659 0.68 0.667618
Target:  5'- uGCUaCGCGGUuuuuaugcagcuGGUGUUCCUGGcgguGACGg -3'
miRNA:   3'- -CGA-GCGCCG------------CCACAGGGGCCu---CUGCa -5'
14589 3' -61.8 NC_003521.1 + 7970 0.68 0.667618
Target:  5'- -gUCGCGGcCGGgaggGUCCgCGGcGGCGg -3'
miRNA:   3'- cgAGCGCC-GCCa---CAGGgGCCuCUGCa -5'
14589 3' -61.8 NC_003521.1 + 56800 0.68 0.686375
Target:  5'- gGCUCGCGaCGGca-CCUCGGGGugGg -3'
miRNA:   3'- -CGAGCGCcGCCacaGGGGCCUCugCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.