miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 3' -61.8 NC_003521.1 + 94072 0.7 0.545553
Target:  5'- ---aGCGGCGuGUcugaGUCaCCCGGAGGCGa -3'
miRNA:   3'- cgagCGCCGC-CA----CAG-GGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 113574 0.66 0.768057
Target:  5'- aGgaCGCGGUGGggcugGgCCUCGGGGGCa- -3'
miRNA:   3'- -CgaGCGCCGCCa----CaGGGGCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 115917 0.66 0.768057
Target:  5'- aGCUCGCGGUagaGGUGaggCCaguaCGGuugGGGCGUc -3'
miRNA:   3'- -CGAGCGCCG---CCACa--GGg---GCC---UCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 120543 0.67 0.759297
Target:  5'- cCUCgGCGGcCGGcgGUCCCgGGGGAgCGc -3'
miRNA:   3'- cGAG-CGCC-GCCa-CAGGGgCCUCU-GCa -5'
14589 3' -61.8 NC_003521.1 + 122535 0.67 0.741498
Target:  5'- -gUUGCGGCGGcGUCCCUaGAGGuCGc -3'
miRNA:   3'- cgAGCGCCGCCaCAGGGGcCUCU-GCa -5'
14589 3' -61.8 NC_003521.1 + 123689 0.67 0.741498
Target:  5'- uGCggCGUGGCGGUGgaagaGGAGGCGg -3'
miRNA:   3'- -CGa-GCGCCGCCACaggggCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 124257 0.66 0.810165
Target:  5'- cGCcgCGCGGCaugcuuGGUGUCUgCGGGcGCGa -3'
miRNA:   3'- -CGa-GCGCCG------CCACAGGgGCCUcUGCa -5'
14589 3' -61.8 NC_003521.1 + 125408 0.68 0.686375
Target:  5'- cGC-CGCGGCGcUGagUCCGGAGGcCGUg -3'
miRNA:   3'- -CGaGCGCCGCcACagGGGCCUCU-GCA- -5'
14589 3' -61.8 NC_003521.1 + 125843 0.66 0.768057
Target:  5'- gGCUCGCGGUGGUcGUacagcgCCuuGGuGGCc- -3'
miRNA:   3'- -CGAGCGCCGCCA-CA------GGggCCuCUGca -5'
14589 3' -61.8 NC_003521.1 + 129198 0.66 0.8182
Target:  5'- uUUCGcCGGCGGUucgaccucGUCgCCGcGGGGCGa -3'
miRNA:   3'- cGAGC-GCCGCCA--------CAGgGGC-CUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 131089 0.69 0.639315
Target:  5'- gGCUCGC-GCGGg--CUCCGGAcGGCGg -3'
miRNA:   3'- -CGAGCGcCGCCacaGGGGCCU-CUGCa -5'
14589 3' -61.8 NC_003521.1 + 135753 0.67 0.714205
Target:  5'- uGgUgGCGGCGGUGggaucgCCCCuGGGGCu- -3'
miRNA:   3'- -CgAgCGCCGCCACa-----GGGGcCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 136874 0.66 0.768057
Target:  5'- aCUCGCGGCGGguggcgccggUGUUCgCGGucgacaacGACGUg -3'
miRNA:   3'- cGAGCGCCGCC----------ACAGGgGCCu-------CUGCA- -5'
14589 3' -61.8 NC_003521.1 + 151603 0.66 0.793688
Target:  5'- cGCUgGagguCGGcCGGUGUCCCCGGuuaGCa- -3'
miRNA:   3'- -CGAgC----GCC-GCCACAGGGGCCuc-UGca -5'
14589 3' -61.8 NC_003521.1 + 152380 0.66 0.8182
Target:  5'- cGC-CGaGGCGGacgacgucUCCCUGGAGACGc -3'
miRNA:   3'- -CGaGCgCCGCCac------AGGGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 154039 0.68 0.658199
Target:  5'- cGUaCGCGGUGGUG-CCCaUGGAGAUc- -3'
miRNA:   3'- -CGaGCGCCGCCACaGGG-GCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 155094 0.66 0.813396
Target:  5'- aGUUCGCGGCGcugcaggagcagggcGUGgaggacuucUCCCUGGAGAa-- -3'
miRNA:   3'- -CGAGCGCCGC---------------CAC---------AGGGGCCUCUgca -5'
14589 3' -61.8 NC_003521.1 + 160394 0.69 0.620411
Target:  5'- gGCUCGCGuucGCGu--UCCCCGGuGACGa -3'
miRNA:   3'- -CGAGCGC---CGCcacAGGGGCCuCUGCa -5'
14589 3' -61.8 NC_003521.1 + 164785 0.73 0.3837
Target:  5'- --aCGCGGCGGgcacggGUCgUCGGGGACGa -3'
miRNA:   3'- cgaGCGCCGCCa-----CAGgGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 164944 0.66 0.801992
Target:  5'- cCUC-CGGCGGcucgcGUCgCCGGAGAgGg -3'
miRNA:   3'- cGAGcGCCGCCa----CAGgGGCCUCUgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.