miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 199361 0.67 0.979214
Target:  5'- gGGAUGUCUUCGCgUGGuccgaggaguaUAgUGuuGUCGu -3'
miRNA:   3'- -CCUACAGAAGCG-ACU-----------GUgGCggCAGC- -5'
14589 5' -54.2 NC_003521.1 + 210881 0.67 0.979214
Target:  5'- aGGGUGUacgUCGCcucgGugGCCGUCGcCa -3'
miRNA:   3'- -CCUACAga-AGCGa---CugUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 84767 0.67 0.979214
Target:  5'- cGGcgG-CgacgUUGUUGGCACCGCCGa-- -3'
miRNA:   3'- -CCuaCaGa---AGCGACUGUGGCGGCagc -5'
14589 5' -54.2 NC_003521.1 + 165266 0.67 0.979214
Target:  5'- aGGAgGg---CGCUGGCguaGCCGCCGcCGg -3'
miRNA:   3'- -CCUaCagaaGCGACUG---UGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 3625 0.67 0.980693
Target:  5'- aGGAUGUUgUUGUUcucuagcgugccacGGcCGCCGCCGUCu -3'
miRNA:   3'- -CCUACAGaAGCGA--------------CU-GUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 88264 0.67 0.981302
Target:  5'- cGGUGgag-CGCgUGACGCUGCCGUa- -3'
miRNA:   3'- cCUACagaaGCG-ACUGUGGCGGCAgc -5'
14589 5' -54.2 NC_003521.1 + 47132 0.66 0.98323
Target:  5'- uGGAgGUCaUCGUagcaauaGACGCCGCCG-CGc -3'
miRNA:   3'- -CCUaCAGaAGCGa------CUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 6013 0.66 0.98323
Target:  5'- ---cGUCUUCGUcauCGCUGUCGUCGu -3'
miRNA:   3'- ccuaCAGAAGCGacuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 168956 0.66 0.98323
Target:  5'- --cUGUCgccgUCGCUccCGCUGCUGUCGc -3'
miRNA:   3'- ccuACAGa---AGCGAcuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 55860 0.66 0.985003
Target:  5'- ---gGUCcaCGCUGgcccGCACCGCCG-CGa -3'
miRNA:   3'- ccuaCAGaaGCGAC----UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 129013 0.66 0.985003
Target:  5'- ----aUC-UCGCUGGCGCCGCCa--- -3'
miRNA:   3'- ccuacAGaAGCGACUGUGGCGGcagc -5'
14589 5' -54.2 NC_003521.1 + 46808 0.66 0.985003
Target:  5'- ---gGUCUgga-UGACGCCGCCGcCGg -3'
miRNA:   3'- ccuaCAGAagcgACUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 109208 0.66 0.986473
Target:  5'- cGGAUGUUgaCGUUGAgcgaguucagguaCACCG-CGUCGu -3'
miRNA:   3'- -CCUACAGaaGCGACU-------------GUGGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 82853 0.66 0.98663
Target:  5'- cGGcgG-CgUCGCUaccaGCGCCGUCGUCGc -3'
miRNA:   3'- -CCuaCaGaAGCGAc---UGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 39005 0.66 0.98663
Target:  5'- aGGUGUCgaggccggaGCgGGCGCCGCCGa-- -3'
miRNA:   3'- cCUACAGaag------CGaCUGUGGCGGCagc -5'
14589 5' -54.2 NC_003521.1 + 44494 0.66 0.98663
Target:  5'- uGGAaaUCga-GCUGcaGCCGCCGUCGu -3'
miRNA:   3'- -CCUacAGaagCGACugUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 113811 0.66 0.98663
Target:  5'- cGGcgG-CgUCGUcgGGCACCGCCacGUCGg -3'
miRNA:   3'- -CCuaCaGaAGCGa-CUGUGGCGG--CAGC- -5'
14589 5' -54.2 NC_003521.1 + 114497 0.66 0.988117
Target:  5'- uGGGUG-CUgucCGUcGugGCCGCCGUg- -3'
miRNA:   3'- -CCUACaGAa--GCGaCugUGGCGGCAgc -5'
14589 5' -54.2 NC_003521.1 + 46071 0.66 0.988117
Target:  5'- gGGAUGaggUCGC-GACGcCCGgCGUCGc -3'
miRNA:   3'- -CCUACagaAGCGaCUGU-GGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 123501 0.66 0.988117
Target:  5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3'
miRNA:   3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.