miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 84725 0.68 0.959526
Target:  5'- aGGAga----CGCgGGCACUGCCGUCGu -3'
miRNA:   3'- -CCUacagaaGCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 196141 0.68 0.959526
Target:  5'- ---cGUCcgcUGCUGGCGCUGCCGUUc -3'
miRNA:   3'- ccuaCAGaa-GCGACUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 98135 0.68 0.959526
Target:  5'- cGGA-GUCcgugguaGCUGcUGCCGCCGUCGc -3'
miRNA:   3'- -CCUaCAGaag----CGACuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 130752 0.68 0.962923
Target:  5'- aGAgcugGcCUUCGgguacggaCUGACGCUGCUGUCGg -3'
miRNA:   3'- cCUa---CaGAAGC--------GACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 27238 0.68 0.962923
Target:  5'- ---gGUCaUCGCcggcugcuacgUGGCGCUGCUGUCGg -3'
miRNA:   3'- ccuaCAGaAGCG-----------ACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 74108 0.68 0.966116
Target:  5'- aGGAUGauagCUg-GCUGugGCCGCUGgUCa -3'
miRNA:   3'- -CCUACa---GAagCGACugUGGCGGC-AGc -5'
14589 5' -54.2 NC_003521.1 + 76417 0.68 0.966116
Target:  5'- cGGcgGUgUgguggUGCUGGCgACCGuuGUCGu -3'
miRNA:   3'- -CCuaCAgAa----GCGACUG-UGGCggCAGC- -5'
14589 5' -54.2 NC_003521.1 + 181369 0.68 0.967937
Target:  5'- uGGuguUGUCguagaccucgagcUCGCUGccggcggcgGCGCCGCUGUCGc -3'
miRNA:   3'- -CCu--ACAGa------------AGCGAC---------UGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 84649 0.68 0.967937
Target:  5'- gGGAUGUCgugggucuccucCGCcucGcCACCGUCGUCGg -3'
miRNA:   3'- -CCUACAGaa----------GCGa--CuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 127220 0.67 0.974525
Target:  5'- ---cGUCgUCGCUGGCGCgGUgGUCc -3'
miRNA:   3'- ccuaCAGaAGCGACUGUGgCGgCAGc -5'
14589 5' -54.2 NC_003521.1 + 122721 0.67 0.974525
Target:  5'- aGGcgGUCguggUCGUgggcgacGGCGCCGCCGa-- -3'
miRNA:   3'- -CCuaCAGa---AGCGa------CUGUGGCGGCagc -5'
14589 5' -54.2 NC_003521.1 + 214733 0.67 0.974525
Target:  5'- --cUGUCUggGCUucggucaGCGCCGCCGUCu -3'
miRNA:   3'- ccuACAGAagCGAc------UGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 226370 0.67 0.974525
Target:  5'- gGGAg--CggCgGCUGACGCCGCCG-Ca -3'
miRNA:   3'- -CCUacaGaaG-CGACUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 143518 0.67 0.974525
Target:  5'- uGGAUGUCgggC-CUGauccgcacgcGCGCCGCCGgCGa -3'
miRNA:   3'- -CCUACAGaa-GcGAC----------UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 223769 0.67 0.976957
Target:  5'- ---cGUCcUCGCUGuCGgCGCCGUUa -3'
miRNA:   3'- ccuaCAGaAGCGACuGUgGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 44306 0.67 0.976957
Target:  5'- gGGcgGg--UUGCUGugGCCGCUG-CGg -3'
miRNA:   3'- -CCuaCagaAGCGACugUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 220944 0.67 0.976957
Target:  5'- aGGA--UCagCGCcGACGCgGCCGUCa -3'
miRNA:   3'- -CCUacAGaaGCGaCUGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 232392 0.67 0.979214
Target:  5'- ---cGUCUcgCGCUGGCugCGCCuG-CGg -3'
miRNA:   3'- ccuaCAGAa-GCGACUGugGCGG-CaGC- -5'
14589 5' -54.2 NC_003521.1 + 35513 0.67 0.979214
Target:  5'- aGGGUGUCgaggugUCGaaaCUGGucCGCCauGCCGUCGu -3'
miRNA:   3'- -CCUACAGa-----AGC---GACU--GUGG--CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 210881 0.67 0.979214
Target:  5'- aGGGUGUacgUCGCcucgGugGCCGUCGcCa -3'
miRNA:   3'- -CCUACAga-AGCGa---CugUGGCGGCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.