miRNA display CGI


Results 41 - 60 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 102189 0.68 0.95592
Target:  5'- gGGGUGgcgacUUUCGCcGAC-CCGCUGUCc -3'
miRNA:   3'- -CCUACa----GAAGCGaCUGuGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 107255 0.69 0.945114
Target:  5'- gGGAUGUCgcucugacguaggCGCUGAUaggcgcuGCCcacgagGCCGUCGa -3'
miRNA:   3'- -CCUACAGaa-----------GCGACUG-------UGG------CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 109208 0.66 0.986473
Target:  5'- cGGAUGUUgaCGUUGAgcgaguucagguaCACCG-CGUCGu -3'
miRNA:   3'- -CCUACAGaaGCGACU-------------GUGGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 113811 0.66 0.98663
Target:  5'- cGGcgG-CgUCGUcgGGCACCGCCacGUCGg -3'
miRNA:   3'- -CCuaCaGaAGCGa-CUGUGGCGG--CAGC- -5'
14589 5' -54.2 NC_003521.1 + 114497 0.66 0.988117
Target:  5'- uGGGUG-CUgucCGUcGugGCCGCCGUg- -3'
miRNA:   3'- -CCUACaGAa--GCGaCugUGGCGGCAgc -5'
14589 5' -54.2 NC_003521.1 + 117217 0.7 0.92458
Target:  5'- aGAUGUCgcaccCGCUGACGgCCGCgG-CGg -3'
miRNA:   3'- cCUACAGaa---GCGACUGU-GGCGgCaGC- -5'
14589 5' -54.2 NC_003521.1 + 121871 0.68 0.95592
Target:  5'- gGGAcUGUCUcgggCGCUGGCccugacgggacGCCGCCGcCc -3'
miRNA:   3'- -CCU-ACAGAa---GCGACUG-----------UGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 122233 0.69 0.943816
Target:  5'- cGGGUGcCggCGaCUGAgCGCCGCCacGUCGc -3'
miRNA:   3'- -CCUACaGaaGC-GACU-GUGGCGG--CAGC- -5'
14589 5' -54.2 NC_003521.1 + 122721 0.67 0.974525
Target:  5'- aGGcgGUCguggUCGUgggcgacGGCGCCGCCGa-- -3'
miRNA:   3'- -CCuaCAGa---AGCGa------CUGUGGCGGCagc -5'
14589 5' -54.2 NC_003521.1 + 123501 0.66 0.988117
Target:  5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3'
miRNA:   3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 126633 0.69 0.929725
Target:  5'- uGAUGUCgUCGUUGAUGCCcgaGCCGaUCa -3'
miRNA:   3'- cCUACAGaAGCGACUGUGG---CGGC-AGc -5'
14589 5' -54.2 NC_003521.1 + 127044 0.7 0.92458
Target:  5'- ---cGUCg-CGCUGGCcgucGCCGUCGUCGa -3'
miRNA:   3'- ccuaCAGaaGCGACUG----UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 127220 0.67 0.974525
Target:  5'- ---cGUCgUCGCUGGCGCgGUgGUCc -3'
miRNA:   3'- ccuaCAGaAGCGACUGUGgCGgCAGc -5'
14589 5' -54.2 NC_003521.1 + 129013 0.66 0.985003
Target:  5'- ----aUC-UCGCUGGCGCCGCCa--- -3'
miRNA:   3'- ccuacAGaAGCGACUGUGGCGGcagc -5'
14589 5' -54.2 NC_003521.1 + 130752 0.68 0.962923
Target:  5'- aGAgcugGcCUUCGgguacggaCUGACGCUGCUGUCGg -3'
miRNA:   3'- cCUa---CaGAAGC--------GACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 132479 0.73 0.80488
Target:  5'- ---cGUCUUCGgaGA--CCGCCGUCGg -3'
miRNA:   3'- ccuaCAGAAGCgaCUguGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 139782 0.71 0.885047
Target:  5'- cGGAUGgguuuggcgucgcccUCggCGgUGGCgaaGCCGCCGUCGa -3'
miRNA:   3'- -CCUAC---------------AGaaGCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 140853 0.66 0.989212
Target:  5'- uGGAgcgCUUCGCggucucggccgaGGCGCCGCCGcCc -3'
miRNA:   3'- -CCUacaGAAGCGa-----------CUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 141197 0.7 0.91921
Target:  5'- cGGGUGgccgUggCGCUG-CGCCGCCGggCGc -3'
miRNA:   3'- -CCUACa---GaaGCGACuGUGGCGGCa-GC- -5'
14589 5' -54.2 NC_003521.1 + 143518 0.67 0.974525
Target:  5'- uGGAUGUCgggC-CUGauccgcacgcGCGCCGCCGgCGa -3'
miRNA:   3'- -CCUACAGaa-GcGAC----------UGUGGCGGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.